SMTL ID : 3rpe.1

1.1 Angstrom Crystal Structure of Putative Modulator of Drug Activity (MdaB) from Yersinia pestis CO92.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 24 residues within 4Å: Chain A: F.37, H.39, S.40, K.41, G.42, A.43, L.44, N.45, T.47, P.92, A.93, W.94, W.95, M.96, T.148, W.149, N.150, A.151, V.195, I.196, P.199, I.201 Chain B: T.111, Y.132 25 PLIP interactions: 22 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.37, A:W.94, A:W.94, B:T.111 Hydrogen bonds: A:S.40, A:K.41, A:G.42, A:A.43, A:L.44, A:N.45, A:N.45, A:T.47, A:A.93, A:A.93, A:W.95, A:M.96, A:T.148, A:T.148, A:N.150, A:A.151, B:Y.132, B:Y.132 Water bridges: A:N.150, A:N.150 pi-Stacking: A:W.94 FAD.3: 24 residues within 4Å: Chain A: T.111, Y.132 Chain B: F.37, H.39, S.40, K.41, G.42, A.43, L.44, N.45, T.47, P.92, A.93, W.94, W.95, M.96, T.148, W.149, N.150, A.151, V.195, I.196, P.199, I.201 26 PLIP interactions: 24 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.37, B:W.94, B:W.94 Hydrogen bonds: B:H.39, B:S.40, B:K.41, B:G.42, B:A.43, B:L.44, B:N.45, B:N.45, B:T.47, B:T.47, B:A.93, B:A.93, B:W.95, B:M.96, B:T.148, B:T.148, B:N.150, B:A.151, A:Y.132, A:Y.132 Water bridges: B:N.150, B:N.150 pi-Stacking: B:W.94

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: T.47, N.50, V.51, D.54, I.205 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.54 Water bridges: A:F.55, A:R.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.1 Angstrom Crystal Structure of Putative Modulator of Drug Activity (MdaB) from Yersinia pestis CO92. TO BE PUBLISHED

Release Date

2011-05-04

Peptides

Modulator of drug activity B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Modulator of drug activity B