SMTL ID : 3rq0.1

The crystal structure of a glycosyl hydrolases (GH) family protein 16 from Mycobacterium smegmatis str. MC2 155

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: E.46, S.97, D.264 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.46, A:S.97, A:S.97, A:D.264, A:D.264, H2O.27

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: I.62, A.63, K.64, A.65 Ligands: PG4.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.64, A:A.65 Water bridges: A:I.62, A:A.65

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 5 residues within 4Å: Chain A: Y.41, E.128, W.265, R.267, W.269 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.40, A:S.40, A:E.128, A:R.267 Water bridges: A:R.195 PEG.4: 3 residues within 4Å: Chain A: I.185, L.207, Y.216 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.207, A:D.208

5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 8 residues within 4Å: Chain A: A.63, E.67, K.114, A.116, W.145, F.237 Ligands: PO4.2, GOL.13 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.114 Water bridges: A:E.67, A:E.67, A:E.67 PG4.6: 2 residues within 4Å: Chain A: K.64, A.65 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.66, A:Q.83 PG4.7: 4 residues within 4Å: Chain A: N.86, D.87, R.88, R.89 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.89 Water bridges: A:D.87, A:R.88, A:R.88 PG4.8: 5 residues within 4Å: Chain A: T.73, N.162, S.164, W.165, S.247 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.164 PG4.9: 6 residues within 4Å: Chain A: Y.160, W.165, H.172, N.176, W.180, T.182 No protein-ligand interaction detected (PLIP)

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 4 residues within 4Å: Chain A: R.130, W.191, R.193, D.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.130, A:R.193, A:R.193 GOL.11: 3 residues within 4Å: Chain A: R.130, D.264, W.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.264 Water bridges: A:S.97, A:W.265, A:R.267 GOL.12: 4 residues within 4Å: Chain A: G.163, S.164, W.165 Ligands: 211.15 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.167, A:S.167 GOL.13: 7 residues within 4Å: Chain A: W.141, A.143, W.145, E.153, D.155, E.158 Ligands: PG4.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.141, A:D.155, A:E.158 Water bridges: A:E.153, A:N.241 GOL.14: 5 residues within 4Å: Chain A: D.94, K.96, V.100, R.102, L.262 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.94, A:D.94

1 x 211: 2,2',2''-NITRILOTRIETHANOL(Non-covalent)

211.15: 8 residues within 4Å: Chain A: L.136, A.138, W.159, Y.160, G.161, N.162, G.163 Ligands: GOL.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.163 Water bridges: A:A.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a glycosyl hydrolases (GH) family protein 16 from Mycobacterium smegmatis str. MC2 155. To be Published

Release Date

2011-05-11

Peptides

Glycosyl hydrolases family protein 16: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolases family protein 16