SMTL ID : 3rr1.1

Crystal structure of enolase PRK14017 (target EFI-500653) from Ralstonia pickettii 12J

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-octamer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: G.77, P.78, I.79, L.80 Chain B: P.78, I.79 Ligands: CL.2 Ligand excluded by PLIP CL.2: 8 residues within 4Å: Chain A: P.78, I.79 Chain B: G.76, G.77, P.78, I.79, L.80 Ligands: CL.1 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain C: G.77, P.78, I.79, L.80 Chain D: P.78, I.79 Ligands: CL.5 Ligand excluded by PLIP CL.5: 8 residues within 4Å: Chain C: P.78, I.79 Chain D: G.76, G.77, P.78, I.79, L.80 Ligands: CL.4 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain E: G.77, P.78, I.79, L.80 Chain F: P.78, I.79 Ligands: CL.8 Ligand excluded by PLIP CL.8: 8 residues within 4Å: Chain E: P.78, I.79 Chain F: G.76, G.77, P.78, I.79, L.80 Ligands: CL.7 Ligand excluded by PLIP CL.10: 7 residues within 4Å: Chain G: G.77, P.78, I.79, L.80 Chain H: P.78, I.79 Ligands: CL.11 Ligand excluded by PLIP CL.11: 8 residues within 4Å: Chain G: P.78, I.79 Chain H: G.76, G.77, P.78, I.79, L.80 Ligands: CL.10 Ligand excluded by PLIP

4 x MLT: D-MALATE(Non-covalent)

MLT.3: 9 residues within 4Å: Chain B: A.222, A.225, A.226, A.250, G.251, G.252 Chain H: K.195, R.223, H.227 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain H Hydrogen bonds: B:A.222, B:G.252 Water bridges: B:A.226, B:V.253, H:H.227 Hydrophobic interactions: H:R.223 Salt bridges: H:K.195, H:R.223, H:H.227 MLT.6: 9 residues within 4Å: Chain D: A.222, A.225, A.226, A.250, G.251, G.252 Chain F: K.195, R.223, H.227 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain F Hydrogen bonds: D:A.222, D:G.252 Water bridges: D:A.226, D:V.253, F:H.227 Hydrophobic interactions: F:R.223 Salt bridges: F:K.195, F:R.223, F:H.227 MLT.9: 9 residues within 4Å: Chain B: K.195, R.223, H.227 Chain F: A.222, A.225, A.226, A.250, G.251, G.252 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain F Hydrophobic interactions: B:R.223 Water bridges: B:H.227, F:A.226, F:V.253 Salt bridges: B:K.195, B:R.223, B:H.227 Hydrogen bonds: F:A.222, F:G.252 MLT.12: 9 residues within 4Å: Chain D: K.195, R.223, H.227 Chain H: A.222, A.225, A.226, A.250, G.251, G.252 9 PLIP interactions: 4 interactions with chain H, 5 interactions with chain D Hydrogen bonds: H:A.222, H:G.252 Water bridges: H:A.226, H:V.253, D:H.227 Hydrophobic interactions: D:R.223 Salt bridges: D:K.195, D:R.223, D:H.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal structure of enolase PRK14017 from Ralstonia pickettii. To be Published

Release Date

2011-05-11

Peptides

Putative D-galactonate dehydratase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Putative D-galactonate dehydratase

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