SMTL ID : 3rrp.1

Crystal structure of fumarate hydratase Fum from Mycobacterium abscessus with malate bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.1: 15 residues within 4Å: Chain A: S.105, T.107, S.141, S.142, N.143, L.361 Chain B: G.320, S.321, S.322, I.323, M.324, K.327, N.329 Chain C: T.189, H.190 12 PLIP interactions: 5 interactions with chain A, 3 interactions with chain C, 4 interactions with chain B Hydrogen bonds: A:S.105, A:S.141, A:S.142, A:N.143, A:N.143, C:T.189, C:H.190, B:S.322, B:I.323, B:N.329 Salt bridges: C:H.190, B:K.327 LMR.3: 14 residues within 4Å: Chain A: G.320, S.321, S.322, I.323, M.324, K.327, N.329 Chain B: S.105, T.107, S.141, S.142, N.143 Chain D: T.189, H.190 13 PLIP interactions: 4 interactions with chain B, 6 interactions with chain A, 3 interactions with chain D Hydrogen bonds: B:S.105, B:S.142, B:N.143, B:N.143, A:G.320, A:G.320, A:S.322, A:I.323, A:N.329, D:T.189, D:H.190 Salt bridges: A:K.327, D:H.190 LMR.6: 15 residues within 4Å: Chain A: T.189, H.190 Chain C: S.105, T.107, S.141, S.142, N.143, L.361 Chain D: G.320, S.321, S.322, I.323, M.324, K.327, N.329 12 PLIP interactions: 3 interactions with chain A, 5 interactions with chain C, 4 interactions with chain D Hydrogen bonds: A:T.189, A:H.190, C:S.105, C:S.141, C:S.142, C:N.143, C:N.143, D:S.322, D:I.323, D:N.329 Salt bridges: A:H.190, D:K.327 LMR.8: 14 residues within 4Å: Chain B: T.189, H.190 Chain C: G.320, S.321, S.322, I.323, M.324, K.327, N.329 Chain D: S.105, T.107, S.141, S.142, N.143 13 PLIP interactions: 4 interactions with chain D, 6 interactions with chain C, 3 interactions with chain B Hydrogen bonds: D:S.105, D:S.142, D:N.143, D:N.143, C:G.320, C:G.320, C:S.322, C:I.323, C:N.329, B:T.189, B:H.190 Salt bridges: C:K.327, B:H.190

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: S.407, A.431, L.432, K.436 Chain D: L.306 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.407, A:A.431 EDO.4: 5 residues within 4Å: Chain B: E.406, I.411, T.437, I.438, R.439 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.438, B:R.439 Water bridges: B:E.406 EDO.5: 6 residues within 4Å: Chain B: S.407, P.409, A.431, L.432, K.436 Chain C: L.306 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.431, B:K.436 EDO.7: 5 residues within 4Å: Chain B: L.306 Chain C: S.407, A.431, L.432, K.436 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.407, C:A.431 EDO.9: 5 residues within 4Å: Chain D: E.406, I.411, T.437, I.438, R.439 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:I.438, D:R.439 Water bridges: D:E.406 EDO.10: 6 residues within 4Å: Chain A: L.306 Chain D: S.407, P.409, A.431, L.432, K.436 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.431, D:K.436

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-05-11

Peptides

Probable fumarate hydratase Fum: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Probable fumarate hydratase Fum