SMTL ID : 3ru0.1 (1 other biounit)

Cocrystal structure of human SMYD3 with inhibitor Sinefungin bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 16 residues within 4Å: Chain A: R.16, G.17, N.18, Y.126, E.132, N.134, C.182, N.183, S.204, L.205, L.206, N.207, H.208, Y.241, Y.259, F.261 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:N.18, A:N.18, A:N.18, A:E.132, A:N.134, A:N.134, A:S.204, A:N.207, A:N.207, A:H.208, A:H.208 Water bridges: A:R.16, A:Y.126, A:Y.126, A:K.137, A:N.183, A:L.206, A:D.264 pi-Stacking: A:F.261, A:F.261

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.210, C.263, C.265, C.268 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.210, A:C.263, A:C.265, A:C.268 ZN.3: 4 residues within 4Å: Chain A: C.64, C.67, H.85, C.89 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.64, A:C.67, A:H.85, A:C.89 ZN.4: 4 residues within 4Å: Chain A: C.51, C.54, C.73, C.77 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.51, A:C.54, A:C.73, A:C.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Foreman, K.W. et al., Structural and Functional Profiling of the Human Histone Methyltransferase SMYD3. Plos One (2011)

Release Date

2011-05-18

Peptides

SET and MYND domain-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SET and MYND domain-containing protein 3

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