- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-16-mer
- Ligands
- 16 x MG: MAGNESIUM ION(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 20 residues within 4Å:- Chain A: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, L.444, V.488, E.490, K.495
- Ligands: MG.1
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:G.40, A:G.92, A:G.92, A:T.93, A:T.94, A:T.94, A:T.95, A:T.95, A:G.404, A:E.490, A:K.495
- Water bridges: A:N.59, A:D.91, A:K.161
- Salt bridges: A:K.161
ADP.4: 20 residues within 4Å:- Chain B: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, L.444, V.488, E.490, K.495
- Ligands: MG.3
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:G.40, B:G.92, B:G.92, B:T.93, B:T.94, B:T.94, B:T.95, B:T.95, B:G.404, B:E.490, B:K.495
- Water bridges: B:N.59, B:K.161, B:D.386
- Salt bridges: B:K.161
ADP.6: 21 residues within 4Å:- Chain C: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, I.440, L.444, V.488, E.490, K.495
- Ligands: MG.5
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:G.40, C:G.92, C:G.92, C:T.93, C:T.94, C:T.95, C:T.95, C:G.404, C:G.405, C:E.490, C:K.495
- Water bridges: C:N.59, C:K.161, C:K.161, C:D.386
- Salt bridges: C:K.161
ADP.8: 21 residues within 4Å:- Chain D: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, I.440, L.444, V.488, E.490, K.495
- Ligands: MG.7
16 PLIP interactions:16 interactions with chain D- Hydrogen bonds: D:G.40, D:D.91, D:G.92, D:G.92, D:T.93, D:T.93, D:T.94, D:T.95, D:T.95, D:G.404, D:G.405, D:E.490, D:K.495
- Water bridges: D:N.59, D:K.161
- Salt bridges: D:K.161
ADP.10: 20 residues within 4Å:- Chain E: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, L.444, V.488, E.490, K.495
- Ligands: MG.9
15 PLIP interactions:15 interactions with chain E- Hydrogen bonds: E:G.40, E:G.92, E:G.92, E:T.93, E:T.94, E:T.94, E:T.95, E:T.95, E:G.404, E:E.490, E:K.495
- Water bridges: E:N.59, E:D.91, E:K.161
- Salt bridges: E:K.161
ADP.12: 20 residues within 4Å:- Chain F: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, L.444, V.488, E.490, K.495
- Ligands: MG.11
15 PLIP interactions:15 interactions with chain F- Hydrogen bonds: F:G.40, F:G.92, F:G.92, F:T.93, F:T.94, F:T.94, F:T.95, F:T.95, F:G.404, F:E.490, F:K.495
- Water bridges: F:N.59, F:K.161, F:D.386
- Salt bridges: F:K.161
ADP.14: 21 residues within 4Å:- Chain G: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, I.440, L.444, V.488, E.490, K.495
- Ligands: MG.13
16 PLIP interactions:16 interactions with chain G- Hydrogen bonds: G:G.40, G:G.92, G:G.92, G:T.93, G:T.94, G:T.95, G:T.95, G:G.404, G:G.405, G:E.490, G:K.495
- Water bridges: G:N.59, G:K.161, G:K.161, G:D.386
- Salt bridges: G:K.161
ADP.16: 21 residues within 4Å:- Chain H: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, I.440, L.444, V.488, E.490, K.495
- Ligands: MG.15
17 PLIP interactions:17 interactions with chain H- Hydrogen bonds: H:G.40, H:D.91, H:D.91, H:G.92, H:G.92, H:T.93, H:T.93, H:T.94, H:T.95, H:T.95, H:G.404, H:G.405, H:E.490, H:K.495
- Water bridges: H:N.59, H:K.161
- Salt bridges: H:K.161
ADP.18: 20 residues within 4Å:- Chain I: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, L.444, V.488, E.490, K.495
- Ligands: MG.17
13 PLIP interactions:13 interactions with chain I- Hydrogen bonds: I:G.40, I:G.92, I:G.92, I:T.93, I:T.94, I:T.95, I:G.404, I:E.490, I:K.495
- Water bridges: I:N.59, I:D.91, I:K.161
- Salt bridges: I:K.161
ADP.20: 20 residues within 4Å:- Chain J: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, L.444, V.488, E.490, K.495
- Ligands: MG.19
13 PLIP interactions:13 interactions with chain J- Hydrogen bonds: J:G.40, J:G.92, J:G.92, J:T.93, J:T.94, J:T.95, J:G.404, J:E.490, J:K.495
- Water bridges: J:N.59, J:K.161, J:D.386
- Salt bridges: J:K.161
ADP.22: 21 residues within 4Å:- Chain K: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, I.440, L.444, V.488, E.490, K.495
- Ligands: MG.21
17 PLIP interactions:17 interactions with chain K- Hydrogen bonds: K:G.40, K:G.92, K:G.92, K:T.93, K:T.94, K:T.94, K:T.95, K:G.404, K:G.405, K:E.490, K:K.495
- Water bridges: K:N.59, K:K.161, K:K.161, K:D.386, K:D.386
- Salt bridges: K:K.161
ADP.24: 21 residues within 4Å:- Chain L: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, I.440, L.444, V.488, E.490, K.495
- Ligands: MG.23
17 PLIP interactions:17 interactions with chain L- Hydrogen bonds: L:G.40, L:G.92, L:G.92, L:T.93, L:T.93, L:T.94, L:T.94, L:T.95, L:G.404, L:G.405, L:E.490, L:K.495
- Water bridges: L:N.59, L:T.93, L:T.93, L:K.161
- Salt bridges: L:K.161
ADP.26: 20 residues within 4Å:- Chain M: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, L.444, V.488, E.490, K.495
- Ligands: MG.25
13 PLIP interactions:13 interactions with chain M- Hydrogen bonds: M:G.40, M:G.92, M:G.92, M:T.93, M:T.94, M:T.95, M:G.404, M:E.490, M:K.495
- Water bridges: M:N.59, M:D.91, M:K.161
- Salt bridges: M:K.161
ADP.28: 20 residues within 4Å:- Chain N: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, L.444, V.488, E.490, K.495
- Ligands: MG.27
13 PLIP interactions:13 interactions with chain N- Hydrogen bonds: N:G.40, N:G.92, N:G.92, N:T.93, N:T.94, N:T.95, N:G.404, N:E.490, N:K.495
- Water bridges: N:N.59, N:K.161, N:D.386
- Salt bridges: N:K.161
ADP.30: 21 residues within 4Å:- Chain O: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, I.440, L.444, V.488, E.490, K.495
- Ligands: MG.29
17 PLIP interactions:17 interactions with chain O- Hydrogen bonds: O:G.40, O:G.92, O:G.92, O:T.93, O:T.94, O:T.94, O:T.95, O:G.404, O:G.405, O:E.490, O:K.495
- Water bridges: O:N.59, O:K.161, O:K.161, O:D.386, O:D.386
- Salt bridges: O:K.161
ADP.32: 21 residues within 4Å:- Chain P: T.38, L.39, G.40, P.41, N.59, D.91, G.92, T.93, T.94, T.95, T.156, T.159, K.161, G.403, G.404, I.440, L.444, V.488, E.490, K.495
- Ligands: MG.31
17 PLIP interactions:17 interactions with chain P- Hydrogen bonds: P:G.40, P:G.92, P:G.92, P:T.93, P:T.93, P:T.94, P:T.94, P:T.95, P:G.404, P:G.405, P:E.490, P:K.495
- Water bridges: P:N.59, P:T.93, P:T.93, P:K.161
- Salt bridges: P:K.161
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pereira, J.H. et al., Mechanism of nucleotide sensing in group II chaperonins. Embo J. (2012)
- Release Date
- 2012-01-04
- Peptides
- Chaperonin: ABCDEFGHIJKLMNOP
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
DM
AN
BO
CP
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-16-mer
- Ligands
- 16 x MG: MAGNESIUM ION(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pereira, J.H. et al., Mechanism of nucleotide sensing in group II chaperonins. Embo J. (2012)
- Release Date
- 2012-01-04
- Peptides
- Chaperonin: ABCDEFGHIJKLMNOP
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
DM
AN
BO
CP
D