SMTL ID : 3rvz.1

Crystal structure of the NavAb voltage-gated sodium channel (Ile217Cys, 2.8 A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

28 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)

PX4.1: 6 residues within 4Å: Chain D: G.48, L.49, S.52, K.53, T.54 Ligands: PX4.2 Ligand excluded by PLIP PX4.2: 1 residues within 4Å: Ligands: PX4.1 Ligand excluded by PLIP PX4.3: 2 residues within 4Å: Chain A: S.150 Chain D: Q.133 Ligand excluded by PLIP PX4.4: 4 residues within 4Å: Chain A: P.93, W.94, S.139, I.142 Ligand excluded by PLIP PX4.5: 1 residues within 4Å: Chain A: M.192 Ligand excluded by PLIP PX4.6: 2 residues within 4Å: Chain A: S.52 Ligands: PX4.7 Ligand excluded by PLIP PX4.7: 1 residues within 4Å: Ligands: PX4.6 Ligand excluded by PLIP PX4.8: 3 residues within 4Å: Chain A: Q.133, M.134 Chain B: S.150 Ligand excluded by PLIP PX4.9: 6 residues within 4Å: Chain A: M.155, G.182, F.185, Y.186 Chain B: W.213, F.221 Ligand excluded by PLIP PX4.10: 1 residues within 4Å: Chain B: Y.209 Ligand excluded by PLIP PX4.11: 8 residues within 4Å: Chain B: M.155, T.180, G.182, Y.186, F.189 Chain C: W.213, I.217, F.221 Ligand excluded by PLIP PX4.12: 1 residues within 4Å: Chain C: Y.209 Ligand excluded by PLIP PX4.13: 2 residues within 4Å: Chain B: W.94, S.139 Ligand excluded by PLIP PX4.14: 2 residues within 4Å: Chain B: M.192 Chain C: T.224 Ligand excluded by PLIP PX4.15: 6 residues within 4Å: Chain B: G.48, L.49, S.52, K.53, T.54 Ligands: PX4.16 Ligand excluded by PLIP PX4.16: 1 residues within 4Å: Ligands: PX4.15 Ligand excluded by PLIP PX4.17: 2 residues within 4Å: Chain B: Q.133 Chain C: S.150 Ligand excluded by PLIP PX4.18: 4 residues within 4Å: Chain C: P.93, W.94, S.139, I.142 Ligand excluded by PLIP PX4.19: 1 residues within 4Å: Chain C: M.192 Ligand excluded by PLIP PX4.20: 2 residues within 4Å: Chain C: S.52 Ligands: PX4.21 Ligand excluded by PLIP PX4.21: 1 residues within 4Å: Ligands: PX4.20 Ligand excluded by PLIP PX4.22: 3 residues within 4Å: Chain C: Q.133, M.134 Chain D: S.150 Ligand excluded by PLIP PX4.23: 6 residues within 4Å: Chain C: M.155, G.182, F.185, Y.186 Chain D: W.213, F.221 Ligand excluded by PLIP PX4.24: 1 residues within 4Å: Chain D: Y.209 Ligand excluded by PLIP PX4.25: 8 residues within 4Å: Chain A: W.213, I.217, F.221 Chain D: M.155, T.180, G.182, Y.186, F.189 Ligand excluded by PLIP PX4.26: 1 residues within 4Å: Chain A: Y.209 Ligand excluded by PLIP PX4.27: 2 residues within 4Å: Chain D: W.94, S.139 Ligand excluded by PLIP PX4.28: 2 residues within 4Å: Chain A: T.224 Chain D: M.192 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Payandeh, J. et al., The crystal structure of a voltage-gated sodium channel. Nature (2011)

Release Date

2011-07-13

Peptides

Ion transport protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Membrane

We predict this structure to be a membrane protein.
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Ion transport protein

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