SMTL ID : 3rw0.1

Crystal structure of the NavAb voltage-gated sodium channel (Met221Cys, 2.95 A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-tetramer

Ligands

20 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)

PX4.1: 4 residues within 4Å: Chain A: I.115 Chain B: V.208, Y.209, Y.211 Ligand excluded by PLIP PX4.2: 5 residues within 4Å: Chain A: Y.160 Chain D: G.48, L.49, S.52 Ligands: PX4.3 Ligand excluded by PLIP PX4.3: 2 residues within 4Å: Chain D: L.49 Ligands: PX4.2 Ligand excluded by PLIP PX4.4: 2 residues within 4Å: Chain B: L.194, T.224 Ligand excluded by PLIP PX4.5: 6 residues within 4Å: Chain A: I.45, G.48, L.49, S.52, T.54 Chain B: Y.160 Ligand excluded by PLIP PX4.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PX4.7: 8 residues within 4Å: Chain A: M.155, T.180, G.182, E.183, Y.186, F.189 Chain B: W.213, F.221 Ligand excluded by PLIP PX4.8: 8 residues within 4Å: Chain B: M.155, T.180, G.182, E.183, Y.186, F.189 Chain C: W.213, F.221 Ligand excluded by PLIP PX4.9: 4 residues within 4Å: Chain B: I.115 Chain C: F.170, Y.209, Y.211 Ligand excluded by PLIP PX4.10: 2 residues within 4Å: Chain C: L.194, T.224 Ligand excluded by PLIP PX4.11: 4 residues within 4Å: Chain C: I.115 Chain D: V.208, Y.209, Y.211 Ligand excluded by PLIP PX4.12: 5 residues within 4Å: Chain B: G.48, L.49, S.52 Chain C: Y.160 Ligands: PX4.13 Ligand excluded by PLIP PX4.13: 2 residues within 4Å: Chain B: L.49 Ligands: PX4.12 Ligand excluded by PLIP PX4.14: 2 residues within 4Å: Chain D: L.194, T.224 Ligand excluded by PLIP PX4.15: 6 residues within 4Å: Chain C: I.45, G.48, L.49, S.52, T.54 Chain D: Y.160 Ligand excluded by PLIP PX4.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PX4.17: 8 residues within 4Å: Chain C: M.155, T.180, G.182, E.183, Y.186, F.189 Chain D: W.213, F.221 Ligand excluded by PLIP PX4.18: 8 residues within 4Å: Chain A: W.213, F.221 Chain D: M.155, T.180, G.182, E.183, Y.186, F.189 Ligand excluded by PLIP PX4.19: 4 residues within 4Å: Chain A: F.170, Y.209, Y.211 Chain D: I.115 Ligand excluded by PLIP PX4.20: 2 residues within 4Å: Chain A: L.194, T.224 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Payandeh, J. et al., The crystal structure of a voltage-gated sodium channel. Nature (2011)

Release Date

2011-07-13

Peptides

Ion transport protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Membrane

We predict this structure to be a membrane protein.
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Ion transport protein