- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: R.58
- Chain B: P.92, H.303
- Ligands: GOL.1, SO4.8
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Water bridges: A:R.58, A:R.58
- Salt bridges: A:R.58, B:H.303
SO4.5: 5 residues within 4Å:- Chain A: K.28, R.83, T.100, F.101, Q.102
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.102
- Water bridges: A:R.83, A:R.83, A:Q.102
- Salt bridges: A:K.28, A:R.83
SO4.6: 7 residues within 4Å:- Chain A: K.96, Y.98
- Chain B: K.96, Y.98
- Ligands: SO4.7, SO4.17, SO4.18
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:Y.98, B:Y.98
- Salt bridges: A:K.96, B:K.96
- Water bridges: B:R.58
SO4.7: 6 residues within 4Å:- Chain A: Y.98, S.112, Q.172
- Ligands: GOL.1, SO4.6, SO4.17
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.112, A:Q.172
- Water bridges: A:Y.113, A:Q.172
SO4.8: 7 residues within 4Å:- Chain A: S.57, R.58, E.59
- Chain B: H.303, Q.304
- Ligands: GOL.1, SO4.4
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:Q.304, A:E.59
- Salt bridges: B:H.303, A:K.115
- Water bridges: A:E.59, A:E.59
SO4.9: 5 residues within 4Å:- Chain A: R.88, K.151
- Chain B: Q.25, P.26, R.27
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.27
- Salt bridges: A:R.88, A:K.151
SO4.15: 5 residues within 4Å:- Chain A: P.92, H.303
- Chain B: R.58
- Ligands: GOL.12, SO4.19
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Salt bridges: A:H.303, B:R.58
- Water bridges: B:R.58, B:R.58
SO4.16: 5 residues within 4Å:- Chain B: K.28, R.83, T.100, F.101, Q.102
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:T.100, B:Q.102
- Water bridges: B:R.83, B:R.83, B:Q.102
- Salt bridges: B:K.28, B:R.83
SO4.17: 7 residues within 4Å:- Chain A: K.96, Y.98
- Chain B: K.96, Y.98
- Ligands: SO4.6, SO4.7, SO4.18
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain A- Salt bridges: B:K.96, A:K.96
- Hydrogen bonds: A:Y.98, A:Y.98
- Water bridges: A:R.58
SO4.18: 6 residues within 4Å:- Chain B: Y.98, S.112, Q.172
- Ligands: SO4.6, GOL.12, SO4.17
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.98, B:S.112, B:Q.172
- Water bridges: B:Y.113, B:Q.172
SO4.19: 7 residues within 4Å:- Chain A: H.303, Q.304
- Chain B: S.57, R.58, E.59
- Ligands: GOL.12, SO4.15
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:E.59, A:Q.304
- Water bridges: B:E.59, B:E.59
- Salt bridges: B:K.115, A:H.303
SO4.20: 5 residues within 4Å:- Chain A: Q.25, P.26, R.27
- Chain B: R.88, K.151
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.88, B:K.151
- Hydrogen bonds: A:R.27
- 2 x ABQ: [4-amino-7-(propan-2-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl](6-{[(3S,4R)-4-(4-fluorophenyl)tetrahydrofuran-3-yl]amino}pyrazin-2-yl)methanone(Non-covalent)
ABQ.11: 22 residues within 4Å:- Chain A: L.40, G.41, E.42, G.43, S.46, T.47, V.48, A.61, K.63, V.95, L.111, S.112, Y.113, A.114, E.118, K.159, E.161, N.162, L.164, T.174, D.175
- Ligands: GOL.10
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:E.118, A:L.164
- Hydrogen bonds: A:S.112, A:A.114, A:D.175
- Water bridges: A:K.159, A:E.161, A:F.176
ABQ.22: 22 residues within 4Å:- Chain B: L.40, G.41, E.42, G.43, S.46, T.47, V.48, A.61, K.63, V.95, L.111, S.112, Y.113, A.114, E.118, K.159, E.161, N.162, L.164, T.174, D.175
- Ligands: GOL.21
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:E.118, B:L.164
- Hydrogen bonds: B:S.112, B:A.114, B:T.174, B:D.175
- Water bridges: B:K.159, B:E.161, B:F.176
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Murphy, S.T. et al., Discovery of Novel, Potent, and Selective Inhibitors of 3-Phosphoinositide-Dependent Kinase (PDK1). J.Med.Chem. (2011)
- Release Date
- 2011-11-16
- Peptides
- 3-phosphoinositide-dependent protein kinase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ABQ: [4-amino-7-(propan-2-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl](6-{[(3S,4R)-4-(4-fluorophenyl)tetrahydrofuran-3-yl]amino}pyrazin-2-yl)methanone(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Murphy, S.T. et al., Discovery of Novel, Potent, and Selective Inhibitors of 3-Phosphoinositide-Dependent Kinase (PDK1). J.Med.Chem. (2011)
- Release Date
- 2011-11-16
- Peptides
- 3-phosphoinositide-dependent protein kinase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A