SMTL ID : 3rx8.1

structure of AaCel9A in complex with cellobiose-like isofagomine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.302, E.304, D.307, E.308, A.344 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.302, A:E.304, A:D.307, A:E.308, A:A.344

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.104, C.121, H.122, H.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.104, A:C.121, A:H.122, A:H.142

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 4 residues within 4Å: Chain A: E.166, Y.167, R.356, G.419 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.167

2 x 9MR: (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranoside(Non-covalent)

9MR.4: 9 residues within 4Å: Chain A: D.146, F.221, L.224, W.401, H.461, R.463, Y.511, E.515 Ligands: 9MR.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.221 Hydrogen bonds: A:R.463, A:R.463 Salt bridges: A:H.461, A:R.463 9MR.5: 12 residues within 4Å: Chain A: D.143, A.144, D.146, Y.150, G.298, Y.300, W.343, W.401, E.515, Y.519, W.520 Ligands: 9MR.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.143, A:Y.300, A:W.343, A:W.401, A:Y.519 Water bridges: A:E.299, A:Y.300, A:Y.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morera, S. et al., Fortuitious binding of inhibitors-derived isofagomine for inverting GH9 beta-glycosidases. Org.Biomol.Chem. (2011)

Release Date

2011-08-24

Peptides

Cellulase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellulase

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