SMTL ID : 3rzg.1

Duplex Interrogation by a Direct DNA Repair Protein in the Search of Damage

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: S.55, V.56, R.58, K.59, K.110, D.114 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.110, A:D.114 Water bridges: A:K.59, A:D.114, A:D.114

1 x XL3: propane-1-thiol(Non-covalent)

XL3.2: 6 residues within 4Å: Chain A: H.115, C.117 Chain B: A.9, C.10 Chain C: A.5, G.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yi, C. et al., Duplex interrogation by a direct DNA repair protein in search of base damage. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-06-06

Peptides

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2