SMTL ID : 3s1x.1

Transaldolase from Thermoplasma acidophilum in complex with D-sedoheptulose 7-phosphate Schiff-base intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-10-mer

Ligands

10 x I22: D-ALTRO-HEPT-2-ULOSE 7-PHOSPHATE(Covalent)

I22.1: 12 residues within 4Å: Chain A: D.6, T.26, T.27, N.28, K.86, T.110, S.130, F.132, R.135, A.166, S.167, R.169 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:K.86 Hydrogen bonds: A:D.6, A:T.26, A:N.28, A:T.110, A:S.130, A:S.130, A:S.167 Water bridges: A:D.6, A:R.135, A:R.135, A:R.135, A:I.168, A:R.169 Salt bridges: A:R.135, A:R.169 I22.2: 14 residues within 4Å: Chain B: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, F.132, R.135, A.166, S.167, R.169 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:K.86 Hydrogen bonds: B:D.6, B:T.26, B:N.28, B:N.108, B:S.130, B:S.130, B:S.167 Water bridges: B:D.6, B:T.110, B:R.135, B:R.135, B:R.135, B:I.168, B:R.169, B:R.169 Salt bridges: B:R.135, B:R.169 I22.3: 16 residues within 4Å: Chain C: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, F.132, R.135, L.164, A.166, S.167, R.169 Chain D: F.208 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:K.86 Hydrogen bonds: C:D.6, C:T.26, C:N.28, C:N.108, C:S.130, C:S.130, C:S.167 Water bridges: C:D.6, C:R.135, C:R.135, C:R.135, C:R.135, C:R.135, C:I.168, C:R.169 Salt bridges: C:R.135, C:R.169 I22.4: 15 residues within 4Å: Chain D: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, F.132, R.135, A.166, S.167, R.169 Chain E: F.208 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:K.86 Hydrogen bonds: D:D.6, D:N.28, D:N.108, D:S.130, D:S.130, D:S.167 Water bridges: D:D.6, D:R.135, D:R.135, D:R.135, D:I.168, D:R.169, D:R.169 Salt bridges: D:R.135, D:R.169 I22.5: 13 residues within 4Å: Chain E: D.6, T.26, T.27, N.28, L.31, K.86, T.110, S.130, F.132, R.135, A.166, S.167, R.169 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:K.86 Hydrogen bonds: E:D.6, E:N.28, E:T.110, E:S.130, E:S.130, E:S.167 Water bridges: E:D.6, E:R.135, E:R.135, E:I.168, E:R.169 Salt bridges: E:R.135, E:R.169 I22.6: 12 residues within 4Å: Chain F: D.6, T.26, T.27, N.28, K.86, T.110, S.130, F.132, R.135, A.166, S.167, R.169 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:K.86 Hydrogen bonds: F:D.6, F:N.28, F:T.110, F:S.130, F:S.130, F:S.167 Water bridges: F:D.6, F:R.135, F:R.135, F:R.135, F:I.168 Salt bridges: F:R.135, F:R.169 I22.7: 14 residues within 4Å: Chain G: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, F.132, R.135, A.166, S.167, R.169 16 PLIP interactions: 16 interactions with chain G Hydrophobic interactions: G:K.86 Hydrogen bonds: G:D.6, G:N.28, G:N.108, G:S.130, G:S.130, G:S.167 Water bridges: G:D.6, G:R.135, G:R.135, G:R.135, G:I.168, G:R.169, G:R.169 Salt bridges: G:R.135, G:R.169 I22.8: 16 residues within 4Å: Chain H: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, F.132, R.135, L.164, A.166, S.167, R.169 Chain I: F.208 18 PLIP interactions: 18 interactions with chain H Hydrophobic interactions: H:K.86 Hydrogen bonds: H:D.6, H:N.28, H:N.108, H:S.130, H:S.130, H:S.167 Water bridges: H:D.6, H:T.110, H:R.135, H:R.135, H:R.135, H:R.135, H:R.135, H:I.168, H:R.169 Salt bridges: H:R.135, H:R.169 I22.9: 15 residues within 4Å: Chain I: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, F.132, R.135, A.166, S.167, R.169 Chain J: F.208 18 PLIP interactions: 18 interactions with chain I Hydrophobic interactions: I:K.86 Hydrogen bonds: I:D.6, I:T.26, I:N.28, I:N.108, I:T.110, I:S.130, I:S.130, I:S.167 Water bridges: I:D.6, I:R.135, I:R.135, I:R.135, I:I.168, I:R.169, I:R.169 Salt bridges: I:R.135, I:R.169 I22.10: 13 residues within 4Å: Chain J: D.6, T.26, T.27, N.28, L.31, K.86, T.110, S.130, F.132, R.135, A.166, S.167, R.169 16 PLIP interactions: 16 interactions with chain J Hydrophobic interactions: J:K.86 Hydrogen bonds: J:D.6, J:T.26, J:N.28, J:S.130, J:S.130, J:S.167 Water bridges: J:D.6, J:T.110, J:R.135, J:R.135, J:I.168, J:R.169, J:R.169 Salt bridges: J:R.135, J:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lehwess-Litzmann, A. et al., Twisted Schiff base intermediates and substrate locale revise transaldolase mechanism. Nat.Chem.Biol. (2011)

Release Date

2011-08-24

Peptides

Probable transaldolase: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Probable transaldolase

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