SMTL ID : 3s1y.1

AMP-C BETA-LACTAMASE (PSEUDOMONAS AERUGINOSA) in complex with a beta-lactamase inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x S1Y: [(2S,3R)-1-{[(4S)-1-(2-aminoethyl)azepan-4-yl]carbamoyl}-2-formylpyrrolidin-3-yl]sulfamic acid(Covalent)

S1Y.1: 19 residues within 4Å: Chain A: G.63, S.64, Q.120, Y.151, N.153, V.213, G.214, P.215, G.216, Y.223, A.293, K.316, T.317, G.318, S.319, T.320, N.321, N.347 Ligands: IPA.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Q.120, A:V.213, A:Y.223 Hydrogen bonds: A:S.64, A:Y.151, A:N.153, A:G.214, A:Y.223, A:K.316, A:T.317, A:S.319, A:N.347 Water bridges: A:T.317, A:S.319, A:N.321 Salt bridges: A:K.316

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Q.120, F.121, N.153, Y.223 Ligand excluded by PLIP

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 6 residues within 4Å: Chain A: L.119, T.290, A.293, L.294, N.347 Ligands: S1Y.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.119, A:T.290, A:L.294 Hydrogen bonds: A:N.347 Water bridges: A:S.289, A:T.290, A:T.290 IPA.4: 2 residues within 4Å: Chain A: Q.295, P.296 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.295, A:P.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H. et al., Side chain SAR of bicyclic Beta-lactamase inhibitors (BLIs). 2. N-Alkylated and open chain analogs of MK-8712. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-06-29

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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