SMTL ID : 3s41.1

Glucokinase in complex with activator and glucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 15 residues within 4Å: Chain A: S.155, F.156, P.157, T.172, K.173, N.208, D.209, T.210, I.229, G.233, C.234, N.235, E.260, Q.291, E.294 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.172, A:K.173, A:N.208, A:N.208, A:C.234, A:N.235, A:E.260, A:E.260, A:Q.291 Water bridges: A:G.233 Salt bridges: A:K.173

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: M.242, V.245, V.248, G.250 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.250

1 x S41: N,N-dimethyl-5-({2-methyl-6-[(5-methylpyrazin-2-yl)carbamoyl]-1-benzofuran-4-yl}oxy)pyrimidine-2-carboxamide(Non-covalent)

S41.3: 19 residues within 4Å: Chain A: Y.65, V.66, R.67, T.69, S.73, V.95, I.163, M.214, I.215, Y.218, Y.219, C.224, E.225, M.239, L.455, V.456, A.458, V.459, A.460 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.66, A:I.163, A:Y.218, A:Y.218, A:E.225 Hydrogen bonds: A:R.67, A:R.67 Water bridges: A:T.69 pi-Stacking: A:Y.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfefferkorn, J.A. et al., Designing glucokinase activators with reduced hypoglycemia risk: discovery of N,N-dimethyl-5-(2-methyl-6-((5-methylpyrazin-2-yl)-carbamoyl)benzofuran-4-yloxy)pyrimidine-2-carboxamide as a clinical candidate for the treatment of type 2 diabetes mellitus. MEDCHEMCOMM (2011)

Release Date

2011-09-14

Peptides

Glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase

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