Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 3s70.1
Crystal structure of active caspase-6 bound with Ac-VEID-CHO solved by As-SAD
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.62 Å
Oligo State
homo-dimer
Ligands
2 x
ACE
-
VAL
-
GLU
-
ILE
-
ASA
:
aldehyde inhibitor Ac-VEID-CHO
(Non-covalent)
ACE-VAL-GLU-ILE-ASA.1:
14 residues within 4Å:
Chain A:
E.40
,
R.41
,
H.98
,
G.99
,
Q.138
,
C.140
,
H.145
,
Y.194
,
S.195
,
H.196
,
R.197
,
E.198
,
T.199
Ligands:
CAC.3
18
PLIP interactions
:
18 interactions with chain A
Hydrophobic interactions:
A:Y.194
,
A:H.196
,
A:T.199
Hydrogen bonds:
A:H.98
,
A:G.99
,
A:Q.138
,
A:C.140
,
A:S.195
,
A:R.197
,
A:R.197
,
A:R.197
,
A:T.199
Water bridges:
A:R.42
,
A:R.197
Salt bridges:
A:R.41
,
A:H.98
,
A:R.197
,
A:R.197
ACE-VAL-GLU-ILE-ASA.2:
14 residues within 4Å:
Chain B:
R.41
,
S.97
,
H.98
,
G.99
,
Q.138
,
C.140
,
H.145
,
Y.194
,
S.195
,
H.196
,
R.197
,
E.198
,
T.199
Ligands:
CAC.10
19
PLIP interactions
:
19 interactions with chain B
Hydrophobic interactions:
B:Y.194
,
B:H.196
,
B:T.199
Hydrogen bonds:
B:G.99
,
B:Q.138
,
B:C.140
,
B:S.195
,
B:R.197
,
B:R.197
,
B:R.197
,
B:T.199
Water bridges:
B:R.42
,
B:R.197
,
B:R.197
,
B:V.200
Salt bridges:
B:R.41
,
B:H.98
,
B:R.197
,
B:R.197
8 x
CAC
:
CACODYLATE ION
(Non-covalent)
CAC.3:
3 residues within 4Å:
Chain A:
V.238
,
C.241
Ligands:
ACE-VAL-GLU-ILE-ASA.1
No protein-ligand interaction detected (PLIP)
CAC.4:
7 residues within 4Å:
Chain A:
R.141
,
Y.187
,
E.191
,
C.254
,
F.255
,
A.256
Chain B:
A.256
No protein-ligand interaction detected (PLIP)
CAC.5:
4 residues within 4Å:
Chain A:
T.52
,
V.62
,
C.64
Ligands:
ACT.7
No protein-ligand interaction detected (PLIP)
CAC.6:
5 residues within 4Å:
Chain A:
N.28
,
E.30
,
C.45
,
R.48
,
N.66
No protein-ligand interaction detected (PLIP)
CAC.9:
6 residues within 4Å:
Chain A:
A.256
Chain B:
R.141
,
Y.187
,
E.191
,
C.254
,
A.256
No protein-ligand interaction detected (PLIP)
CAC.10:
4 residues within 4Å:
Chain B:
V.238
,
C.241
Ligands:
ACE-VAL-GLU-ILE-ASA.2
,
ACE-VAL-GLU-ILE-ASA.2
No protein-ligand interaction detected (PLIP)
CAC.11:
4 residues within 4Å:
Chain B:
C.45
,
A.46
,
R.48
,
D.49
No protein-ligand interaction detected (PLIP)
CAC.12:
3 residues within 4Å:
Chain B:
T.52
,
V.62
,
C.64
No protein-ligand interaction detected (PLIP)
1 x
ACT
:
ACETATE ION
(Non-functional Binders)
ACT.7:
3 residues within 4Å:
Chain A:
R.48
,
C.64
Ligands:
CAC.5
1
PLIP interactions
:
1 interactions with chain A
Salt bridges:
A:R.48
1 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.8:
2 residues within 4Å:
Chain A:
R.237
,
G.248
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Liu, X. et al., Get phases from arsenic anomalous scattering: de novo SAD phasing of two protein structures crystallized in cacodylate buffer. Plos One (2011)
Release Date
2012-04-11
Peptides
Caspase-6:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
C
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Caspase-6
Related Entries With Identical Sequence
3k7e.1
|
3od5.1
|
3od5.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme