SMTL ID : 3s7f.1

Structural Basis of Substrate Methylation and Inhibition of SMYD2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: G.16, K.17, G.18, R.19, E.135, H.137, C.181, N.182, A.203, L.204, M.205, N.206, H.207, Y.240, Y.258, F.260 Chain B: K.5 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.19, A:R.19, A:H.137, A:N.206, A:N.206, A:H.207, A:H.207 Salt bridges: A:R.19 pi-Stacking: A:F.260, A:F.260

1 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.2: 4 residues within 4Å: Chain A: W.356, R.390, L.391, G.394 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.356

3 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.52, C.55, C.74, C.78 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.52, A:C.55, A:C.74, A:C.78 ZN.4: 4 residues within 4Å: Chain A: C.65, C.68, H.86, C.90 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.65, A:C.68, A:H.86, A:C.90 ZN.5: 4 residues within 4Å: Chain A: C.209, C.262, C.264, C.267 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.209, A:C.262, A:C.264, A:C.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferguson, A.D. et al., Structural Basis of Substrate Methylation and Inhibition of SMYD2. Structure (2011)

Release Date

2011-08-10

Peptides

N-lysine methyltransferase SMYD2: A
p53 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
I

N-lysine methyltransferase SMYD2

p53 peptide

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