SMTL ID : 3s7h.1

Structure of thrombin mutant Y225P in the E* form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain B: L.46, N.53 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.53

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: E.15, S.18, L.19, E.20 Chain B: K.212, N.217 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.212, B:K.212, B:N.217 Water bridges: A:S.18 GOL.3: 5 residues within 4Å: Chain B: A.126, A.127, H.242, F.244, R.245 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niu, W. et al., Crystallographic and Kinetic Evidence of Allostery in a Trypsin-like Protease. Biochemistry (2011)

Release Date

2011-07-06

Peptides

Prothrombin: A
Prothrombin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Prothrombin

Prothrombin

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