SMTL ID : 3s9f.1

The structure of Tryparedoxin I from Leishmania major

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

10 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: T.131, L.132, T.145, R.146, A.147, R.148 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.132 MG.2: 4 residues within 4Å: Chain A: R.35, F.97, P.110, F.111 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: N.113, N.115, I.116 Chain B: N.113 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain A: H.27, E.30, A.31 Chain B: K.123 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.27, H2O.2, H2O.2 MG.5: 1 residues within 4Å: Chain A: H.78 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.78, H2O.1, H2O.1, H2O.1, H2O.1 MG.6: 6 residues within 4Å: Chain B: T.131, L.132, T.145, R.146, A.147, R.148 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:L.132 MG.7: 4 residues within 4Å: Chain B: R.35, F.97, P.110, F.111 No protein-ligand interaction detected (PLIP) MG.8: 4 residues within 4Å: Chain A: N.113 Chain B: N.113, N.115, I.116 No protein-ligand interaction detected (PLIP) MG.9: 4 residues within 4Å: Chain A: K.123 Chain B: H.27, E.30, A.31 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.27, H2O.4, H2O.4 MG.10: 1 residues within 4Å: Chain B: H.78 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.78, H2O.4, H2O.4, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiorillo, A. et al., The crystal structures of the tryparedoxin-tryparedoxin peroxidase couple unveil the structural determinants of Leishmania detoxification pathway. Plos Negl Trop Dis (2012)

Release Date

2012-06-13

Peptides

Tryparedoxin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Tryparedoxin