SMTL ID : 3s9s.1

Ligand binding domain of PPARgamma complexed with a benzimidazole partial agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x M0T: 1-(3,4-dichlorobenzyl)-2-methyl-N-[(1R)-1-phenylpropyl]-1H-benzimidazole-5-carboxamide(Non-covalent)

M0T.1: 21 residues within 4Å: Chain A: I.88, F.89, G.91, C.92, Q.93, R.95, S.96, H.130, I.133, Y.134, L.137, L.140, V.146, I.148, M.155, F.170, M.171, K.174, H.256, L.272, Y.280 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.89, A:Q.93, A:R.95, A:I.133, A:I.133, A:L.137, A:L.140, A:V.146, A:I.148, A:F.170, A:F.170, A:L.272 Hydrogen bonds: A:S.96, A:S.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sime, M. et al., Discovery of GSK1997132B a novel centrally penetrant benzimidazole PPARgamma partial agonist. Bioorg.Med.Chem.Lett. (2011)

Release Date

2012-06-06

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

Nuclear receptor coactivator 1

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