SMTL ID : 3sbu.1 (1 other biounit)

Crystal structure of a ntf2-like protein (BF2862) from Bacteroides fragilis NCTC 9343 at 2.15 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: E.115, V.124, I.146, E.147, V.155, N.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.147, A:N.220 Water bridges: A:E.115, A:E.115 GOL.2: 3 residues within 4Å: Chain A: D.102, L.103, D.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.102, A:D.102 GOL.3: 5 residues within 4Å: Chain A: E.152, E.156, F.157, H.160, F.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.171 GOL.4: 8 residues within 4Å: Chain A: S.40, F.41, D.42, V.104, D.106, T.107, L.109, Y.216 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.41, A:D.42, A:D.42, A:V.104, A:T.107 GOL.5: 5 residues within 4Å: Chain A: V.104, K.232, S.239, I.241, T.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.239, A:T.259 GOL.6: 7 residues within 4Å: Chain A: Y.66, G.68, E.69, N.142, L.143, R.144 Ligands: GOL.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.69, A:N.142, A:L.143, A:R.144 GOL.7: 6 residues within 4Å: Chain A: Y.66, Y.128, A.140, N.142, R.144 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.128, A:N.142, A:R.144 GOL.11: 5 residues within 4Å: Chain B: S.89, Y.90, G.233, N.236, F.238 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.89, B:N.236, B:N.236

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 5 residues within 4Å: Chain A: Q.88, S.89, Y.90, P.207, K.210 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.88, A:S.89 Water bridges: A:S.212 PEG.9: 6 residues within 4Å: Chain A: W.79, K.80, H.81, D.82, D.83, K.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.83 Water bridges: A:D.82, A:D.82 PEG.10: 5 residues within 4Å: Chain A: P.183, D.184 Chain B: F.118, D.209, K.210 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.184 Water bridges: B:D.209 PEG.12: 6 residues within 4Å: Chain B: Q.88, S.89, Y.90, W.116, P.207, K.210 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.89 Water bridges: B:Q.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Hypothetical ntf2-like protein (BF2862) from Bacteroides fragilis NCTC 9343 at 2.15 A resolution. To be published

Release Date

2011-07-13

Peptides

Hypothetical ntf2-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical ntf2-like protein

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