SMTL ID : 3sc6.3 (5 other biounits)

2.65 Angstrom resolution crystal structure of dTDP-4-dehydrorhamnose reductase (rfbD) from Bacillus anthracis str. Ames in complex with NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 22 residues within 4Å: Chain A: G.12, N.14, G.15, Q.16, L.17, K.37, L.40, D.41, I.42, T.43, C.63, A.64, A.65, T.67, I.82, I.104, S.105, T.106, Y.130, K.134, T.153, L.156 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.156 Hydrogen bonds: A:N.14, A:Q.16, A:Q.16, A:L.17, A:D.41, A:D.41, A:I.42, A:T.43, A:A.65, A:T.67, A:Y.130, A:L.156, A:L.156 Water bridges: A:G.15, A:G.15, A:G.15 Salt bridges: A:K.37

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: V.69, Y.108, R.251 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.108 Water bridges: A:V.69 Salt bridges: A:R.251 SO4.3: 4 residues within 4Å: Chain A: K.19, Y.160, G.161, K.166 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.161 Salt bridges: A:K.19, A:K.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Law, A. et al., Structure of the Bacillus anthracis dTDP-L-rhamnose-biosynthetic enzyme dTDP-4-dehydrorhamnose reductase (RfbD). Acta Crystallogr F Struct Biol Commun (2017)

Release Date

2011-06-22

Peptides

dTDP-4-dehydrorhamnose reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

dTDP-4-dehydrorhamnose reductase

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