SMTL ID : 3se7.2 (2 other biounits)

ancient VanA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.07 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain A: K.133, F.169, K.171, G.176, S.177, S.178, V.181, E.207, E.208, A.209, V.210, E.214, G.252, S.253, R.290, D.292, F.294, N.304, E.305, N.307 Ligands: MG.2, MG.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:K.171, A:S.177, A:S.178, A:E.208, A:V.210, A:E.214, A:S.253, A:R.290, A:N.304, A:N.307 Salt bridges: A:K.133, A:K.133, A:K.171 pi-Stacking: A:F.169, A:F.169 ATP.4: 23 residues within 4Å: Chain B: K.133, F.169, K.171, S.175, G.176, S.177, S.178, V.181, E.207, E.208, A.209, V.210, E.214, G.252, S.253, R.290, D.292, F.294, N.304, E.305, N.307 Ligands: MG.5, MG.6 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:K.171, B:S.177, B:S.178, B:F.179, B:E.208, B:V.210, B:E.214, B:S.253, B:S.253, B:R.290, B:D.292, B:N.304, B:N.307 Water bridges: B:K.133, B:K.133 Salt bridges: B:K.133, B:K.133, B:K.171 pi-Stacking: B:F.169, B:F.169

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: G.176, E.305, N.307 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.305 MG.3: 4 residues within 4Å: Chain A: D.292, N.304, E.305 Ligands: ATP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.292, A:E.305 MG.5: 4 residues within 4Å: Chain B: G.176, E.305, N.307 Ligands: ATP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.305 MG.6: 4 residues within 4Å: Chain B: D.292, N.304, E.305 Ligands: ATP.4 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.292, B:E.305, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D'Costa, V.M. et al., Antibiotic resistance is ancient. Nature (2011)

Release Date

2011-09-14

Peptides

VanA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

VanA

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