SMTL ID : 3sf0.1

Structure of Recombinant Haemophilus Influenzae e(P4) Acid Phosphatase mutant D64N complexed with 5'AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: N.64, D.66, D.181 Ligands: AMP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.66, A:D.181, H2O.1, H2O.3 MG.3: 4 residues within 4Å: Chain B: N.64, D.66, D.181 Ligands: AMP.4 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.66, B:D.181, H2O.11, H2O.13

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 11 residues within 4Å: Chain A: N.64, D.66, F.86, W.91, T.124, N.125, R.126, K.161, D.185, Y.221 Ligands: MG.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:N.64, A:D.66, A:D.66, A:W.91, A:N.125, A:D.185 Water bridges: A:L.65, A:Q.79, A:T.124, A:N.125, A:N.125, A:K.127, A:N.182, A:N.220, A:Y.221, A:G.222 Salt bridges: A:K.161 pi-Stacking: A:F.86, A:F.86, A:W.91, A:Y.221 AMP.4: 11 residues within 4Å: Chain B: N.64, D.66, F.86, W.91, T.124, N.125, R.126, K.161, D.185, Y.221 Ligands: MG.3 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:N.64, B:D.66, B:D.66, B:W.91, B:N.125, B:D.185 Water bridges: B:L.65, B:L.65, B:Q.79, B:N.125, B:N.125, B:K.127, B:N.182, B:N.220, B:G.222 Salt bridges: B:K.161 pi-Stacking: B:F.86, B:F.86, B:W.91, B:Y.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, H. et al., Structural basis of the inhibition of class C acid phosphatases by adenosine 5'-phosphorothioate. Febs J. (2011)

Release Date

2011-09-28

Peptides

Lipoprotein E: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Lipoprotein E