SMTL ID : 3sfz.1

Crystal structure of full-length murine Apaf-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: P.123, I.125, F.126, V.127, R.129, A.156, G.157, C.158, G.159, K.160, S.161, V.162, P.321, L.322, S.325, F.425, H.438 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:V.127, A:V.127, A:G.157, A:C.158, A:G.159, A:S.161, A:S.161, A:S.161, A:V.162, A:S.325 Water bridges: A:K.160, A:D.244 Salt bridges: A:K.160, A:H.438, A:H.438

5 x GBL: GAMMA-BUTYROLACTONE(Non-covalent)

GBL.2: 8 residues within 4Å: Chain A: S.387, I.388, L.389, Q.390, T.446, L.453, H.457, Y.489 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.453 Salt bridges: A:H.457 GBL.3: 6 residues within 4Å: Chain A: D.191, S.193, H.521, H.524, A.528, Y.529 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.528 Salt bridges: A:H.521, A:H.524 GBL.4: 3 residues within 4Å: Chain A: K.189, Q.190, D.191 No protein-ligand interaction detected (PLIP) GBL.5: 7 residues within 4Å: Chain A: L.550, N.551, L.566, C.569, E.570, Y.1215, N.1217 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.550 Hydrogen bonds: A:N.1217 GBL.6: 5 residues within 4Å: Chain A: L.650, L.651, D.652, T.688, K.690 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.651 Salt bridges: A:K.690

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reubold, T.F. et al., Crystal structure of full-length Apaf-1: how the death signal is relayed in the mitochondrial pathway of apoptosis. Structure (2011)

Release Date

2011-08-24

Peptides

Apoptotic peptidase activating factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Apoptotic peptidase activating factor 1