SMTL ID : 3sg9.3 (2 other biounits)

Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa Kanamycin A Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x KAN: KANAMYCIN A(Non-covalent)

KAN.1: 11 residues within 4Å: Chain A: N.32, N.196, D.197, S.199, H.202, D.220, E.235, E.238, E.239, W.271, Y.278 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.197, A:D.197, A:S.199, A:D.220, A:D.220, A:D.220, A:E.239, A:Y.278 Water bridges: A:E.235, A:E.235 KAN.3: 8 residues within 4Å: Chain B: N.32, D.197, S.199, H.202, D.220, E.235, E.268, W.271 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.32, B:D.197, B:S.199, B:D.220, B:D.220, B:E.235, B:E.268, B:E.268 Water bridges: B:D.197

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain B: Y.17, P.18, D.19 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Crystal Structures of Antibiotic-Bound Complexes of Aminoglycoside 2''-Phosphotransferase IVa Highlight the Diversity in Substrate Binding Modes among Aminoglycoside Kinases. Biochemistry (2011)

Release Date

2011-06-29

Peptides

APH(2'')-Id: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

APH(2'')-Id

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