SMTL ID : 3sgu.1

Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase covalently modified by 5-fluoro-6-iodo-UMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x 5FU: 5-FLUORO-URIDINE-5'-MONOPHOSPHATE(Covalent)

5FU.1: 17 residues within 4Å: Chain A: A.18, D.20, K.42, D.70, K.72, L.123, M.126, S.127, P.180, V.182, Q.185, V.201, G.202, R.203 Chain B: D.75, I.76, T.79 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.20, A:K.42, A:K.72, A:S.127, A:S.127, A:S.127, A:Q.185, A:G.202, A:R.203, B:D.75 Water bridges: A:G.181, A:G.181, A:G.181, A:S.204 Salt bridges: A:R.203 5FU.2: 17 residues within 4Å: Chain A: D.75, I.76, T.79 Chain B: A.18, D.20, K.42, D.70, K.72, L.123, M.126, S.127, P.180, V.182, Q.185, V.201, G.202, R.203 17 PLIP interactions: 2 interactions with chain A, 15 interactions with chain B Hydrogen bonds: A:D.75, A:T.79, B:D.20, B:K.42, B:K.72, B:S.127, B:S.127, B:S.127, B:Q.185, B:G.202, B:R.203 Water bridges: B:D.20, B:G.181, B:G.181, B:G.181, B:S.204 Salt bridges: B:R.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase covalently modified by 5-fluoro-6-iodo-UMP. To be Published

Release Date

2012-05-02

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Orotidine 5'-phosphate decarboxylase

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