SMTL ID : 3shf.1

Crystal structure of the R265S mutant of full-length murine Apaf-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.55 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: P.130, I.132, F.133, V.134, R.136, A.163, G.164, C.165, G.166, K.167, S.168, V.169, P.328, L.329, S.332, F.432, H.445 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:V.134, A:V.134, A:G.164, A:C.165, A:G.166, A:S.168, A:S.168, A:V.169, A:S.332 Salt bridges: A:K.167, A:H.445, A:H.445

2 x GBL: GAMMA-BUTYROLACTONE(Non-covalent)

GBL.2: 6 residues within 4Å: Chain A: S.394, I.395, L.396, T.453, L.460, H.464 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.460 Hydrogen bonds: A:L.396 Salt bridges: A:H.464 GBL.3: 6 residues within 4Å: Chain A: D.198, M.204, H.528, H.531, A.535, Y.536 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.528, A:H.531

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reubold, T.F. et al., Crystal structure of full-length Apaf-1: how the death signal is relayed in the mitochondrial pathway of apoptosis. Structure (2011)

Release Date

2011-08-24

Peptides

Apoptotic peptidase activating factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Apoptotic peptidase activating factor 1