SMTL ID : 3shr.2 (1 other biounit)

Crystal Structure of cGMP-dependent Protein Kinase Reveals Novel Site of Interchain Communication

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)

CMP.1: 13 residues within 4Å: Chain A: I.74, V.93, K.95, L.100, F.109, G.110, E.111, L.112, A.113, R.120, T.121, A.122, V.124 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.95, A:G.110, A:E.111, A:E.111, A:L.112, A:A.113, A:T.121, A:T.121 Salt bridges: A:R.120 CMP.4: 12 residues within 4Å: Chain B: I.74, V.93, M.103, F.109, G.110, E.111, L.112, A.113, R.120, T.121, A.122, V.124 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.110, B:E.111, B:E.111, B:L.112, B:A.113, B:T.121, B:T.121, B:A.122 Salt bridges: B:R.120 CMP.5: 13 residues within 4Å: Chain C: I.74, V.93, K.95, L.100, F.109, G.110, E.111, L.112, A.113, R.120, T.121, A.122, V.124 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:K.95, C:G.110, C:E.111, C:E.111, C:L.112, C:A.113, C:T.121 Salt bridges: C:R.120 CMP.8: 12 residues within 4Å: Chain D: I.74, V.93, M.103, F.109, G.110, E.111, L.112, A.113, R.120, T.121, A.122, V.124 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:G.110, D:E.111, D:E.111, D:L.112, D:A.113, D:T.121, D:T.121, D:A.122 Salt bridges: D:R.120

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: S.30, E.31, R.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.31, A:R.32 SO4.3: 3 residues within 4Å: Chain A: K.206, G.207, K.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.207 Salt bridges: A:K.206, A:K.229 SO4.6: 3 residues within 4Å: Chain C: S.30, E.31, R.32 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.31, C:R.32 SO4.7: 3 residues within 4Å: Chain C: K.206, G.207, K.229 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.207 Salt bridges: C:K.206, C:K.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osborne, B.W. et al., Crystal Structure of cGMP-Dependent Protein Kinase Reveals Novel Site of Interchain Communication. Structure (2011)

Release Date

2011-09-21

Peptides

cGMP-dependent protein kinase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

cGMP-dependent protein kinase 1

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