SMTL ID : 3si7.6 (5 other biounits)

The crystal structure of the NBD1 domain of the mouse CFTR protein, deltaF508 mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-octamer

Ligands

8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 14 residues within 4Å: Chain A: W.14, E.23, Q.26, V.53, S.72, T.73, G.74, S.75, G.76, K.77, T.78, S.79, Q.106 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:E.23, A:E.23, A:Q.26, A:G.74, A:S.75, A:G.76, A:K.77, A:T.78, A:S.79 Water bridges: A:K.77, A:Q.106 Salt bridges: A:K.77, A:K.77 ATP.6: 13 residues within 4Å: Chain B: W.14, L.22, V.53, T.73, G.74, S.75, G.76, K.77, T.78, S.79, Q.106 Chain H: P.112 Ligands: MG.7 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:V.53, B:G.74, B:G.74, B:S.75, B:G.76, B:K.77, B:T.78, B:S.79, B:S.79, B:Q.106 Water bridges: B:T.78, B:Q.106 Salt bridges: B:K.77, B:K.77 ATP.11: 14 residues within 4Å: Chain C: W.14, E.23, Q.26, V.53, S.72, T.73, G.74, S.75, G.76, K.77, T.78, S.79, Q.106 Ligands: MG.12 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:E.23, C:E.23, C:Q.26, C:G.74, C:S.75, C:G.76, C:K.77, C:T.78, C:S.79 Water bridges: C:K.77, C:Q.106 Salt bridges: C:K.77, C:K.77 ATP.16: 13 residues within 4Å: Chain D: W.14, L.22, V.53, T.73, G.74, S.75, G.76, K.77, T.78, S.79, Q.106 Chain F: P.112 Ligands: MG.17 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:V.53, D:G.74, D:G.74, D:S.75, D:G.76, D:K.77, D:T.78, D:S.79, D:S.79, D:Q.106 Water bridges: D:T.78, D:Q.106 Salt bridges: D:K.77, D:K.77 ATP.21: 14 residues within 4Å: Chain E: W.14, E.23, Q.26, V.53, S.72, T.73, G.74, S.75, G.76, K.77, T.78, S.79, Q.106 Ligands: MG.22 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:E.23, E:E.23, E:Q.26, E:G.74, E:S.75, E:G.76, E:K.77, E:T.78, E:S.79 Water bridges: E:K.77, E:Q.106 Salt bridges: E:K.77, E:K.77 ATP.26: 13 residues within 4Å: Chain B: P.112 Chain F: W.14, L.22, V.53, T.73, G.74, S.75, G.76, K.77, T.78, S.79, Q.106 Ligands: MG.27 14 PLIP interactions: 14 interactions with chain F Hydrogen bonds: F:V.53, F:G.74, F:G.74, F:S.75, F:G.76, F:K.77, F:T.78, F:S.79, F:S.79, F:Q.106 Water bridges: F:T.78, F:Q.106 Salt bridges: F:K.77, F:K.77 ATP.31: 14 residues within 4Å: Chain G: W.14, E.23, Q.26, V.53, S.72, T.73, G.74, S.75, G.76, K.77, T.78, S.79, Q.106 Ligands: MG.32 13 PLIP interactions: 13 interactions with chain G Hydrogen bonds: G:E.23, G:E.23, G:Q.26, G:G.74, G:S.75, G:G.76, G:K.77, G:T.78, G:S.79 Water bridges: G:K.77, G:Q.106 Salt bridges: G:K.77, G:K.77 ATP.36: 13 residues within 4Å: Chain D: P.112 Chain H: W.14, L.22, V.53, T.73, G.74, S.75, G.76, K.77, T.78, S.79, Q.106 Ligands: MG.37 14 PLIP interactions: 14 interactions with chain H Hydrogen bonds: H:V.53, H:G.74, H:G.74, H:S.75, H:G.76, H:K.77, H:T.78, H:S.79, H:S.79, H:Q.106 Water bridges: H:T.78, H:Q.106 Salt bridges: H:K.77, H:K.77

16 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Q.26, T.78, Q.106 Ligands: ATP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.78, H2O.3 MG.3: 2 residues within 4Å: Chain A: G.64, A.208 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.64, A:A.208, H2O.1, H2O.2 MG.7: 3 residues within 4Å: Chain B: T.78, Q.106 Ligands: ATP.6 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.78, H2O.4, H2O.6 MG.8: 2 residues within 4Å: Chain B: G.64, A.208 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:G.64, B:A.208, H2O.4, H2O.4, H2O.5 MG.12: 4 residues within 4Å: Chain C: Q.26, T.78, Q.106 Ligands: ATP.11 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:T.78, H2O.9 MG.13: 2 residues within 4Å: Chain C: G.64, A.208 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:G.64, C:A.208, H2O.7, H2O.7 MG.17: 3 residues within 4Å: Chain D: T.78, Q.106 Ligands: ATP.16 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:T.78, H2O.10, H2O.11 MG.18: 2 residues within 4Å: Chain D: G.64, A.208 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:G.64, D:A.208, H2O.10, H2O.10, H2O.10 MG.22: 4 residues within 4Å: Chain E: Q.26, T.78, Q.106 Ligands: ATP.21 2 PLIP interactions: 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:T.78, H2O.15 MG.23: 2 residues within 4Å: Chain E: G.64, A.208 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:G.64, E:A.208, H2O.12, H2O.13 MG.27: 3 residues within 4Å: Chain F: T.78, Q.106 Ligands: ATP.26 3 PLIP interactions: 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:T.78, H2O.16, H2O.17 MG.28: 2 residues within 4Å: Chain F: G.64, A.208 5 PLIP interactions: 2 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:G.64, F:A.208, H2O.16, H2O.16, H2O.16 MG.32: 4 residues within 4Å: Chain G: Q.26, T.78, Q.106 Ligands: ATP.31 2 PLIP interactions: 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:T.78, H2O.20 MG.33: 2 residues within 4Å: Chain G: G.64, A.208 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:G.64, G:A.208, H2O.18, H2O.19 MG.37: 3 residues within 4Å: Chain H: T.78, Q.106 Ligands: ATP.36 3 PLIP interactions: 1 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:T.78, H2O.21, H2O.23 MG.38: 2 residues within 4Å: Chain H: G.64, A.208 5 PLIP interactions: 2 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:G.64, H:A.208, H2O.21, H2O.21, H2O.22

16 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 7 residues within 4Å: Chain A: V.152, L.153, G.154, G.157, V.158, T.159 Chain B: L.190 Ligand excluded by PLIP ACT.5: 2 residues within 4Å: Chain A: E.155 Chain G: S.44 Ligand excluded by PLIP ACT.9: 7 residues within 4Å: Chain A: L.190 Chain B: V.152, L.153, G.154, G.157, V.158, T.159 Ligand excluded by PLIP ACT.10: 6 residues within 4Å: Chain A: K.144, S.161, Q.164 Chain B: K.144, S.161, Q.164 Ligand excluded by PLIP ACT.14: 7 residues within 4Å: Chain C: V.152, L.153, G.154, G.157, V.158, T.159 Chain D: L.190 Ligand excluded by PLIP ACT.15: 2 residues within 4Å: Chain C: E.155 Chain E: S.44 Ligand excluded by PLIP ACT.19: 7 residues within 4Å: Chain C: L.190 Chain D: V.152, L.153, G.154, G.157, V.158, T.159 Ligand excluded by PLIP ACT.20: 6 residues within 4Å: Chain C: K.144, S.161, Q.164 Chain D: K.144, S.161, Q.164 Ligand excluded by PLIP ACT.24: 7 residues within 4Å: Chain E: V.152, L.153, G.154, G.157, V.158, T.159 Chain F: L.190 Ligand excluded by PLIP ACT.25: 2 residues within 4Å: Chain A: S.44 Chain E: E.155 Ligand excluded by PLIP ACT.29: 7 residues within 4Å: Chain E: L.190 Chain F: V.152, L.153, G.154, G.157, V.158, T.159 Ligand excluded by PLIP ACT.30: 6 residues within 4Å: Chain E: K.144, S.161, Q.164 Chain F: K.144, S.161, Q.164 Ligand excluded by PLIP ACT.34: 7 residues within 4Å: Chain G: V.152, L.153, G.154, G.157, V.158, T.159 Chain H: L.190 Ligand excluded by PLIP ACT.35: 2 residues within 4Å: Chain C: S.44 Chain G: E.155 Ligand excluded by PLIP ACT.39: 7 residues within 4Å: Chain G: L.190 Chain H: V.152, L.153, G.154, G.157, V.158, T.159 Ligand excluded by PLIP ACT.40: 6 residues within 4Å: Chain G: K.144, S.161, Q.164 Chain H: K.144, S.161, Q.164 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mendoza, J.L. et al., Requirements for efficient correction of DeltaF508 CFTR revealed by analyses of evolved sequences. Cell(Cambridge,Mass.) (2012)

Release Date

2012-02-01

Peptides

Cystic fibrosis transmembrane conductance regulator: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

E
C

F
D

G
C

H
D

Cystic fibrosis transmembrane conductance regulator

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