SMTL ID : 3sia.1

Crystal structure of URE3-binding protein, (D127A,N129A) mutant, iodide phased

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.61, D.63, S.65, T.67, E.69, E.72 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.61, A:D.63, A:T.67, A:E.69, A:E.72 CA.2: 5 residues within 4Å: Chain A: D.97, D.99, N.101, H.103, E.108 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.97, A:D.99, A:H.103, H2O.1 CA.30: 6 residues within 4Å: Chain B: D.61, D.63, S.65, T.67, E.69, E.72 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.61, B:D.63, B:T.67, B:E.69, B:E.72 CA.31: 5 residues within 4Å: Chain B: D.97, D.99, N.101, H.103, E.108 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.97, B:D.99, B:H.103, H2O.3

52 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 4 residues within 4Å: Chain A: P.30, V.33, S.105, Y.107 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: R.185 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: R.185 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: Q.17, F.39 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: K.114 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: L.118, N.121 Ligand excluded by PLIP IOD.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: W.56, G.80 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: S.85, Q.87, T.88 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain A: C.173 Ligand excluded by PLIP IOD.15: 3 residues within 4Å: Chain A: S.85, P.86, Q.87 Ligand excluded by PLIP IOD.16: 1 residues within 4Å: Chain A: S.131 Ligand excluded by PLIP IOD.17: 2 residues within 4Å: Chain A: Q.152, R.153 Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Chain A: R.153 Ligand excluded by PLIP IOD.19: 1 residues within 4Å: Chain A: N.151 Ligand excluded by PLIP IOD.20: 2 residues within 4Å: Chain A: A.187, M.190 Ligand excluded by PLIP IOD.21: 2 residues within 4Å: Chain A: N.194 Chain B: K.210 Ligand excluded by PLIP IOD.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.23: 1 residues within 4Å: Chain A: P.199 Ligand excluded by PLIP IOD.24: 1 residues within 4Å: Chain A: F.203 Ligand excluded by PLIP IOD.25: 2 residues within 4Å: Chain A: N.204, M.206 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain A: P.31, S.32 Ligand excluded by PLIP IOD.27: 1 residues within 4Å: Chain A: G.22 Ligand excluded by PLIP IOD.28: 2 residues within 4Å: Chain A: I.70, N.71 Ligand excluded by PLIP IOD.32: 4 residues within 4Å: Chain B: P.30, V.33, S.105, Y.107 Ligand excluded by PLIP IOD.33: 1 residues within 4Å: Chain B: R.185 Ligand excluded by PLIP IOD.34: 1 residues within 4Å: Chain B: R.185 Ligand excluded by PLIP IOD.35: 2 residues within 4Å: Chain B: Q.17, F.39 Ligand excluded by PLIP IOD.36: 1 residues within 4Å: Chain B: K.114 Ligand excluded by PLIP IOD.37: 2 residues within 4Å: Chain B: L.118, N.121 Ligand excluded by PLIP IOD.38: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.39: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.40: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.41: 2 residues within 4Å: Chain B: W.56, G.80 Ligand excluded by PLIP IOD.42: 3 residues within 4Å: Chain B: S.85, Q.87, T.88 Ligand excluded by PLIP IOD.43: 1 residues within 4Å: Chain B: C.173 Ligand excluded by PLIP IOD.44: 3 residues within 4Å: Chain B: S.85, P.86, Q.87 Ligand excluded by PLIP IOD.45: 1 residues within 4Å: Chain B: S.131 Ligand excluded by PLIP IOD.46: 2 residues within 4Å: Chain B: Q.152, R.153 Ligand excluded by PLIP IOD.47: 1 residues within 4Å: Chain B: R.153 Ligand excluded by PLIP IOD.48: 1 residues within 4Å: Chain B: N.151 Ligand excluded by PLIP IOD.49: 2 residues within 4Å: Chain B: A.187, M.190 Ligand excluded by PLIP IOD.50: 2 residues within 4Å: Chain A: K.210 Chain B: N.194 Ligand excluded by PLIP IOD.51: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.52: 1 residues within 4Å: Chain B: P.199 Ligand excluded by PLIP IOD.53: 1 residues within 4Å: Chain B: F.203 Ligand excluded by PLIP IOD.54: 2 residues within 4Å: Chain B: N.204, M.206 Ligand excluded by PLIP IOD.55: 2 residues within 4Å: Chain B: P.31, S.32 Ligand excluded by PLIP IOD.56: 1 residues within 4Å: Chain B: G.22 Ligand excluded by PLIP IOD.57: 2 residues within 4Å: Chain B: I.70, N.71 Ligand excluded by PLIP

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.29: 2 residues within 4Å: Chain A: N.151, Q.152 Ligand excluded by PLIP CL.58: 2 residues within 4Å: Chain B: N.151, Q.152 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID) et al., Crystal structure of URE3-binding protein. To be Published

Release Date

2011-06-29

Peptides

URE3-BP sequence specific DNA binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

URE3-BP sequence specific DNA binding protein

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