SMTL ID : 3sib.1 (1 other biounit)

Crystal structure of URE3-binding protein, wild-type

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.61, D.63, S.65, T.67, E.69, E.72 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.61, A:S.65, A:T.67, A:E.69, A:E.72 CA.2: 5 residues within 4Å: Chain A: D.97, D.99, N.101, H.103, E.108 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.97, A:H.103, A:E.108, A:E.108, H2O.1 CA.4: 6 residues within 4Å: Chain B: D.61, D.63, S.65, T.67, E.69, E.72 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.61, B:S.65, B:T.67, B:E.69, B:E.72 CA.5: 5 residues within 4Å: Chain B: D.97, D.99, N.101, H.103, E.108 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.97, B:H.103, B:E.108, B:E.108, H2O.8

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: D.127, N.129, S.131, T.133 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.127, A:N.129, A:N.129, A:S.131 Water bridges: A:R.128 NA.6: 4 residues within 4Å: Chain B: D.127, N.129, S.131, T.133 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.129, B:S.131, B:T.133 Water bridges: B:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID) et al., Crystal structure of URE3-binding protein. To be Published

Release Date

2011-06-29

Peptides

URE3-BP sequence specific DNA binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

URE3-BP sequence specific DNA binding protein

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