SMTL ID : 3sil.1

SIALIDASE FROM SALMONELLA TYPHIMURIUM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 3 residues within 4Å: Chain A: D.59 Ligands: PO4.2, GOL.4 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.59, H2O.22, H2O.22

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: R.34, R.243, R.306, Y.339 Ligands: K.1, GOL.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.339 Water bridges: A:R.34, A:R.34, A:R.34, A:R.34, A:R.34 Salt bridges: A:R.34, A:R.243, A:R.306

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: E.11, H.12, K.79 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.11, A:E.11, A:H.12, A:K.79 Water bridges: A:K.79, A:K.79, A:K.79, A:K.79, A:K.79 GOL.4: 9 residues within 4Å: Chain A: D.97, W.125, V.175, Q.191, E.228, Y.339 Ligands: K.1, PO4.2, GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.191, A:E.228, A:E.228 GOL.5: 10 residues within 4Å: Chain A: D.59, Q.60, R.94, M.96, D.97, W.118, T.124, W.125, L.172 Ligands: GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.59, A:Q.60, A:R.94 Water bridges: A:K.123, A:T.124, A:T.124 GOL.6: 5 residues within 4Å: Chain A: V.102, A.103, N.104, E.109, R.345 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.109, A:R.345, A:R.345 Water bridges: A:R.345 GOL.7: 7 residues within 4Å: Chain A: D.86, K.117, N.119, T.135, W.137, D.138, H.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.117, A:N.119, A:D.138 GOL.8: 6 residues within 4Å: Chain A: C.39, I.101, V.102, G.178, L.179, Q.180 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.102, A:Q.180 Water bridges: A:S.177, A:S.177, A:Q.180, A:Q.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garman, E.F. et al., An Enzyme at Atomic Resolution: The 1.05 A Structure of Salmonella Typhimurium Neuraminidase (Sialidase). To be Published

Release Date

1998-11-11

Peptides

SIALIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SIALIDASE

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