SMTL ID : 3sji.1

crystal structure of CVA16 3C in complex with Rupintrivir (AG7088)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x AG7: 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER(Covalent)

AG7.1: 19 residues within 4Å: Chain A: R.40, H.41, E.72, L.126, N.127, L.128, S.129, K.131, T.143, K.144, A.145, G.146, C.148, H.162, I.163, G.164, G.165, N.166, F.171 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.41, A:L.128, A:L.128, A:L.128 Hydrogen bonds: A:S.129, A:T.143, A:G.146, A:I.163, A:G.165, A:G.165 Water bridges: A:G.130, A:C.148, A:G.167

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: P.44, T.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.44, A:T.47, A:T.47 Water bridges: A:D.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, G. et al., Enterovirus 71 and Coxsackievirus A16 3C Proteases: Binding to Rupintrivir and Their Substrates and Anti-Hand, Foot, and Mouth Disease Virus Drug Design. J.Virol. (2011)

Release Date

2011-08-10

Peptides

3C protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C protease

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