SMTL ID : 3sjo.4 (7 other biounits)

structure of EV71 3C in complex with Rupintrivir (AG7088)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x AG7: 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER(Covalent)

AG7.1: 20 residues within 4Å: Chain A: R.40, H.41, E.72, Y.123, L.126, N.127, L.128, S.129, K.131, T.143, K.144, A.145, G.146, C.148, H.162, I.163, G.164, G.165, N.166, F.171 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:H.41, A:L.126, A:L.128, A:L.128, A:F.171 Hydrogen bonds: A:S.129, A:T.143, A:T.143, A:G.146, A:I.163, A:G.165, A:G.165 Water bridges: A:G.130, A:C.148, A:N.166, A:G.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, G. et al., Enterovirus 71 and Coxsackievirus A16 3C Proteases: Binding to Rupintrivir and Their Substrates and Anti-Hand, Foot, and Mouth Disease Virus Drug Design. J.Virol. (2011)

Release Date

2011-08-10

Peptides

3C protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

3C protease

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