SMTL ID : 3sjz.1

The structure of aIF2gamma subunit delta 41-45 from archaeon Sulfolobus solfataricus complexed with GDP and GDPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: H.16, V.17, D.18, H.19, G.20, K.21, T.22, T.23, N.143, K.144, D.146, V.147, S.178, A.179, L.180 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:D.18, A:H.19, A:G.20, A:K.21, A:T.22, A:T.23, A:N.143, A:K.144, A:K.144, A:S.178, A:A.179, A:L.180 Water bridges: A:H.181 Salt bridges: A:K.21, A:D.146 pi-Cation interactions: A:K.144

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 16 residues within 4Å: Chain A: E.38, E.39, T.40, F.215, D.216, V.217, N.218, K.219, K.228, V.231, S.272, I.273, R.274, G.276, A.290, G.292 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.40, A:T.40, A:K.219, A:K.219, A:K.228, A:S.272, A:S.272, A:R.274, A:D.277, A:D.277, A:A.290, A:G.292 Water bridges: A:N.218, A:K.301 Salt bridges: A:K.219 pi-Cation interactions: A:R.274, A:R.274

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 3 residues within 4Å: Chain A: T.222, Q.223, F.224 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arkhipova, V.I. et al., HOLD FOR PUBLICATION. To be Published

Release Date

2012-07-04

Peptides

Translation initiation factor 2 subunit gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Translation initiation factor 2 subunit gamma