SMTL ID : 3smp.1

Monoclinic crystal structure of human pantothenate kinase 1 alpha

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

6 x ARS: ARSENIC(Non-covalent)(Covalent)

ARS.1: 1 residues within 4Å: Chain A: C.186 No protein-ligand interaction detected (PLIP) ARS.2: 2 residues within 4Å: Chain A: C.90, F.381 No protein-ligand interaction detected (PLIP) ARS.4: 2 residues within 4Å: Chain A: C.126, H.148 No protein-ligand interaction detected (PLIP) ARS.5: 2 residues within 4Å: Chain A: D.164, C.174 No protein-ligand interaction detected (PLIP) ARS.12: 2 residues within 4Å: Chain B: C.90, F.381 No protein-ligand interaction detected (PLIP) ARS.13: 3 residues within 4Å: Chain B: C.174, V.332, L.365 No protein-ligand interaction detected (PLIP)

2 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.3: 23 residues within 4Å: Chain A: G.130, E.152, G.205, S.206, G.207, V.208, S.209, R.221, G.224, T.225, S.226 Chain B: I.267, Y.268, Y.272, F.275, L.277, A.281, V.282, A.283, N.313, Y.350, F.354, W.355 19 PLIP interactions: 9 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:F.275, B:L.277, B:A.283, B:Y.350, B:F.354 Hydrogen bonds: B:V.282, B:V.282, B:A.283, A:G.130, A:E.152, A:G.205, A:S.206, A:S.206, A:S.206, A:G.207, A:V.208, A:R.221, A:R.221 pi-Stacking: B:Y.272 ACO.11: 23 residues within 4Å: Chain A: Y.268, A.281, V.282, A.283, M.290, N.313, Y.350, F.354, W.355 Chain B: G.33, G.34, G.129, G.130, G.205, S.206, G.207, V.208, S.209, R.221, G.224, T.225, S.226, N.336 18 PLIP interactions: 7 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.283, A:Y.350, A:F.354 Hydrogen bonds: A:V.282, A:V.282, A:A.283, B:G.34, B:G.130, B:G.205, B:S.206, B:S.206, B:G.207, B:V.208, B:R.221, B:R.221, B:N.336 Water bridges: A:N.313, B:T.35

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: G.33, G.34, T.35, L.36, K.38 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain A: L.156, G.369, Y.370, F.371, G.372 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain B: G.369, Y.370, F.371, G.372 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain A: F.275 Chain B: K.220, R.221 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain B: M.89, C.90 Ligand excluded by PLIP

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.8: 6 residues within 4Å: Chain A: F.25, P.26, Y.41, P.44, L.59, R.63 No protein-ligand interaction detected (PLIP) UNX.9: 4 residues within 4Å: Chain A: Y.72, K.74, T.75, R.108 No protein-ligand interaction detected (PLIP) UNX.10: 4 residues within 4Å: Chain A: N.179, P.180, T.181, Y.350 No protein-ligand interaction detected (PLIP) UNX.17: 1 residues within 4Å: Chain B: F.101 No protein-ligand interaction detected (PLIP) UNX.18: 6 residues within 4Å: Chain B: F.25, P.26, Y.41, P.44, L.59, R.63 No protein-ligand interaction detected (PLIP) UNX.19: 5 residues within 4Å: Chain B: K.134, F.135, E.136, E.137, D.138 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guan, X. et al., Monoclinic crystal structure of human pantothenate kinase 1 alpha. to be published

Release Date

2011-07-20

Peptides

Pantothenate kinase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate kinase 1