SMTL ID : 3snf.1

Onconase, atomic resolution crystal structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Q.1, F.6, K.9, H.10, H.97, F.98 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:F.98 Water bridges: A:Q.1, A:Q.1, A:K.9, A:K.9 Salt bridges: A:K.9, A:H.10, A:H.97 SO4.2: 4 residues within 4Å: Chain A: R.40, P.41, E.42, P.43 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.42 Salt bridges: A:R.40 SO4.3: 3 residues within 4Å: Chain A: W.3, Q.7, K.45 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.3 Water bridges: A:Q.7, A:Q.7, A:Q.7 Salt bridges: A:K.45 SO4.4: 3 residues within 4Å: Chain A: L.79, K.80, K.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.81 Salt bridges: A:K.81 SO4.5: 2 residues within 4Å: Chain A: Q.1, H.97 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.91 Salt bridges: A:H.97

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 7 residues within 4Å: Chain A: P.43, A.46, I.47, T.59, T.60, S.61, F.63 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.47 Hydrogen bonds: A:T.60, A:T.60, A:S.61 Water bridges: A:T.60, A:T.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holloway, D.E. et al., Crystal structure of Onconase at 1.1 angstrom resolution--insights into substrate binding and collective motion. Febs J. (2011)

Release Date

2011-10-05

Peptides

Protein P-30: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein P-30

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