- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.2: 6 residues within 4Å:- Chain A: D.239, Q.241, W.245, Y.247, R.254, W.255
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:D.239, A:R.254
MES.3: 6 residues within 4Å:- Chain A: F.137, E.158, W.163, F.165, R.172, Y.173
4 PLIP interactions:4 interactions with chain A- Water bridges: A:R.172
- Salt bridges: A:E.158, A:R.172
- pi-Cation interactions: A:Y.173
MES.14: 6 residues within 4Å:- Chain B: D.239, Q.241, W.245, Y.247, R.254, W.255
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:Y.247, B:Y.247
- Water bridges: B:D.239, B:R.254, B:Y.257
- Salt bridges: B:D.239, B:R.254
MES.15: 6 residues within 4Å:- Chain B: F.137, E.158, W.163, F.165, R.172, Y.173
4 PLIP interactions:4 interactions with chain B- Water bridges: B:R.172
- Salt bridges: B:E.158, B:R.172
- pi-Cation interactions: B:Y.173
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 6 residues within 4Å:- Chain A: K.37, V.39, R.48, R.51, W.73
- Ligands: SO4.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.51
- Salt bridges: A:K.37, A:R.48
SO4.8: 2 residues within 4Å:- Chain A: K.37, K.38
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.38
SO4.9: 4 residues within 4Å:- Chain A: K.35, K.37, R.48
- Ligands: SO4.7
3 PLIP interactions:3 interactions with chain A- Salt bridges: A:K.35, A:K.37, A:R.48
SO4.10: 3 residues within 4Å:- Chain A: R.217, H.218, K.219
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.254
- Salt bridges: A:R.217
SO4.11: 1 residues within 4Å:- Chain A: R.109
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.109
SO4.12: 2 residues within 4Å:- Chain A: R.109, S.110
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.110, A:S.110
- Salt bridges: A:R.109
SO4.16: 6 residues within 4Å:- Chain B: K.37, V.39, R.48, R.51, W.73
- Ligands: SO4.18
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.51
- Salt bridges: B:K.37, B:R.48
SO4.17: 5 residues within 4Å:- Chain B: G.204, K.205, I.206, L.249, D.250
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.206, B:I.206, B:D.250
SO4.18: 4 residues within 4Å:- Chain B: Q.44, N.47, R.51
- Ligands: SO4.16
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.44, B:N.47, B:R.51
SO4.19: 4 residues within 4Å:- Chain B: I.105, K.107, G.108, R.109
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:I.105, B:K.107, B:R.109
- Salt bridges: B:K.107, B:R.109
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Recacha, R. et al., Crystal structure of NK2 in complex with fractionated Heparin DP10. TO BE PUBLISHED
- Release Date
- 2012-07-04
- Peptides
- Hepatocyte growth factor alpha chain: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Recacha, R. et al., Crystal structure of NK2 in complex with fractionated Heparin DP10. TO BE PUBLISHED
- Release Date
- 2012-07-04
- Peptides
- Hepatocyte growth factor alpha chain: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B