SMTL ID : 3spa.1

Crystal Structure of Human Mitochondrial RNA Polymerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK: Nonamer peptide(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1: 5 residues within 4Å: Chain A: K.182, V.185, F.189, R.222, Q.226 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.182, A:F.189, A:F.189, A:Q.226 Hydrogen bonds: A:R.222, A:Q.226

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: G.634, V.635, P.636, E.682, A.683, R.686, L.687, V.724 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.682 GOL.3: 6 residues within 4Å: Chain A: R.612, V.613, N.614, G.615, R.616, E.730 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.612, A:G.615, A:R.616

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: G.734 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: M.310 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: K.306, R.696 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: L.312, A.313, R.422 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: R.762 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 4 residues within 4Å: Chain A: K.757, S.828, R.891, K.895 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.828 Water bridges: A:K.757, A:S.828 Salt bridges: A:K.757, A:R.891, A:K.895

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ringel, R. et al., Structure of human mitochondrial RNA polymerase. Nature (2011)

Release Date

2011-09-28

Peptides

DNA-directed RNA polymerase, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-directed RNA polymerase, mitochondrial