- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.2: 14 residues within 4Å:- Chain A: L.10, Y.13, D.35, M.36, F.37, K.39, H.43, L.45, H.110, P.113, S.114, M.115, H.119, H.121
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:Y.13, A:Y.13, A:M.36, A:F.37, A:K.39, A:K.39, A:S.114, A:M.115
- Water bridges: A:H.110, A:H.110, A:S.114
- Salt bridges: A:H.110, A:H.119, A:H.121
- pi-Stacking: A:F.37
AMP.8: 14 residues within 4Å:- Chain B: L.10, Y.13, D.35, M.36, F.37, K.39, H.43, L.45, H.110, P.113, S.114, M.115, H.119, H.121
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:Y.13, B:Y.13, B:M.36, B:F.37, B:K.39, B:H.43, B:S.114, B:M.115
- Water bridges: B:N.9, B:K.39, B:K.39, B:H.110
- Salt bridges: B:H.110, B:H.119, B:H.121
- pi-Stacking: B:F.37
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: L.53, H.65, R.66, S.67, L.68
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.65, A:S.67, A:L.68
- Water bridges: A:R.66
- Salt bridges: A:H.65
SO4.4: 2 residues within 4Å:- Chain A: S.93, Q.94
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.94
- Water bridges: A:L.92
SO4.5: 6 residues within 4Å:- Chain A: H.57, A.111, G.112, P.113, R.159, G.160
3 PLIP interactions:3 interactions with chain A- Water bridges: A:G.160
- Salt bridges: A:H.57, A:R.159
SO4.6: 3 residues within 4Å:- Chain A: R.174, W.197, K.200
3 PLIP interactions:3 interactions with chain A- Water bridges: A:W.197
- Salt bridges: A:R.174, A:K.200
SO4.9: 5 residues within 4Å:- Chain B: L.53, H.65, R.66, S.67, L.68
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.67, B:L.68
- Water bridges: B:R.66, B:S.67
- Salt bridges: B:H.65
SO4.10: 3 residues within 4Å:- Chain B: S.93, Q.94, Q.95
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.93, B:Q.94
SO4.11: 6 residues within 4Å:- Chain B: H.57, A.111, G.112, P.113, R.159, G.160
3 PLIP interactions:3 interactions with chain B- Water bridges: B:G.160
- Salt bridges: B:H.57, B:R.159
SO4.12: 2 residues within 4Å:- Chain B: R.174, W.197
4 PLIP interactions:4 interactions with chain B- Water bridges: B:N.103, B:W.197
- Salt bridges: B:R.174, B:K.200
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gong, Y. et al., Crystal structures of aprataxin ortholog Hnt3 reveal the mechanism for reversal of 5'-adenylated DNA. Nat.Struct.Mol.Biol. (2011)
- Release Date
- 2011-10-12
- Peptides
- Aprataxin-like protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gong, Y. et al., Crystal structures of aprataxin ortholog Hnt3 reveal the mechanism for reversal of 5'-adenylated DNA. Nat.Struct.Mol.Biol. (2011)
- Release Date
- 2011-10-12
- Peptides
- Aprataxin-like protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B