SMTL ID : 3spu.1 (2 other biounits)

apo NDM-1 Crystal Structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.94, H.96, H.163 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.94, A:H.96, A:H.163 ZN.2: 4 residues within 4Å: Chain A: D.98, C.182, H.224 Ligands: ZN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.98, A:C.182, A:H.224, H2O.4 ZN.3: 4 residues within 4Å: Chain B: H.94, H.96, H.163 Ligands: ZN.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.94, B:H.96, B:H.163, H2O.6 ZN.4: 4 residues within 4Å: Chain B: D.98, C.182, H.224 Ligands: ZN.3 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.98, B:C.182, B:H.224, H2O.6, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, D. et al., Crystal structure of New Delhi metallo-beta-lactamase reveals molecular basis for antibiotic resistance. Protein Sci. (2011)

Release Date

2011-08-03

Peptides

Beta-lactamase NDM-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Beta-lactamase NDM-1

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