SMTL ID : 3sqv.3 (2 other biounits)

Crystal Structure of E. coli O157:H7 E3 ubiquitin ligase, NleL, with a human E2, UbcH7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-2-2-mer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.320, M.321, Q.322, E.323 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.320, A:G.320, A:Q.322, A:E.323 SO4.2: 3 residues within 4Å: Chain A: H.297, P.298, G.299 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.299 Salt bridges: A:H.297 SO4.3: 1 residues within 4Å: Chain A: N.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.51, A:N.51, A:D.71 SO4.4: 2 residues within 4Å: Chain A: A.17, W.21 No protein-ligand interaction detected (PLIP) SO4.5: 1 residues within 4Å: Chain A: D.156 No protein-ligand interaction detected (PLIP) SO4.6: 2 residues within 4Å: Chain A: L.226, D.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.226, A:D.227 SO4.9: 3 residues within 4Å: Chain B: H.297, P.298, G.299 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.297, B:G.299 Salt bridges: B:H.297 SO4.10: 4 residues within 4Å: Chain B: G.320, M.321, Q.322, E.323 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.320, B:M.321, B:Q.322, B:E.323 SO4.11: 4 residues within 4Å: Chain B: I.224, S.225, L.226, D.227 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.225, B:L.226, B:D.227

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.8: 3 residues within 4Å: Chain A: K.117, T.139, K.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.117, A:T.139, A:K.158 Water bridges: A:N.118 GOL.12: 1 residues within 4Å: Chain C: G.1 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.1, C:G.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, D.Y. et al., Crystal structures of two bacterial HECT-like E3 ligases in complex with a human E2 reveal atomic details of pathogen-host interactions. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-01-25

Peptides

secreted effector protein: AB
Ubiquitin-conjugating enzyme E2 L3: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

secreted effector protein

Ubiquitin-conjugating enzyme E2 L3

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