SMTL ID : 3srx.2 (1 other biounit)

New Delhi Metallo-beta-Lactamase-1 Complexed with Cd

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 2 residues within 4Å: Chain A: A.131, N.133 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.133

3 x CD: CADMIUM ION(Non-covalent)

CD.2: 7 residues within 4Å: Chain A: H.87, H.89, D.91, H.156, C.175 Ligands: CD.3, CL.7 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.87, A:H.89, A:D.91, A:H.156, A:C.175 CD.3: 7 residues within 4Å: Chain A: D.91, H.156, C.175, H.217 Ligands: CD.2, CL.6, CL.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.91, A:C.175, A:H.217 CD.4: 2 residues within 4Å: Chain A: E.119, D.190 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.190, H2O.1

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: K.148, G.164, I.165, D.166, D.169, F.207, P.208, K.209, A.210 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.165, A:K.209, A:A.210 Water bridges: A:K.148, A:A.206

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 6 residues within 4Å: Chain A: H.156, K.178, N.187, H.217 Ligands: CD.3, CL.7 Ligand excluded by PLIP CL.7: 8 residues within 4Å: Chain A: H.89, D.91, H.156, C.175, N.187 Ligands: CD.2, CD.3, CL.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., New Delhi Metallo-beta-Lactamase-1 Complexed with Cd. To be Published

Release Date

2011-07-20

Peptides

Beta-lactamase NDM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-lactamase NDM-1

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