SMTL ID : 3ssa.1

Crystal structure of subunit B mutant N157T of the A1AO ATP synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: E.22, P.23 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.22 GOL.3: 4 residues within 4Å: Chain A: R.87, D.97, G.98, G.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.87 GOL.6: 7 residues within 4Å: Chain A: H.156, T.157, I.185, E.189, T.247, D.248, N.251 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.189, A:T.247, A:D.248, A:N.251 Water bridges: A:T.157, A:T.186, A:S.304, A:S.304 GOL.8: 5 residues within 4Å: Chain A: A.392, L.393, S.394, D.397 Chain B: N.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.394, A:S.394 Water bridges: A:A.392 GOL.9: 1 residues within 4Å: Chain A: I.70 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.41, A:R.41 GOL.10: 7 residues within 4Å: Chain A: I.185, T.186, N.187, E.188, L.212, A.213, D.214 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.187, A:E.188, A:D.214 Water bridges: A:N.187, A:D.214, A:D.214 GOL.14: 7 residues within 4Å: Chain B: K.124, D.125, R.142, H.241, I.289, A.293 Ligands: PEG.18 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.142, B:R.142, B:A.293 GOL.15: 2 residues within 4Å: Chain B: Y.236 Ligands: PEG.19 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.236 GOL.16: 2 residues within 4Å: Chain B: E.204, R.205 No protein-ligand interaction detected (PLIP) GOL.20: 6 residues within 4Å: Chain B: T.137, M.351, K.365, S.368, D.369, Y.372 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.137, B:K.365 Water bridges: B:T.137, B:N.138, B:K.365, B:A.373 GOL.21: 5 residues within 4Å: Chain B: L.384, A.392, L.393, S.394, D.397 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.394, B:D.397 Water bridges: B:A.392 GOL.23: 3 residues within 4Å: Chain B: E.158, Y.338, R.416 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.158, B:E.158

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: Y.277, P.315, D.316 Chain B: E.331, R.334 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain B: S.90, S.92, E.219 Ligand excluded by PLIP CL.22: 6 residues within 4Å: Chain A: R.330 Chain B: Y.272, M.276, Y.277, P.315, D.316 Ligand excluded by PLIP

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 7 residues within 4Å: Chain A: E.158, Y.192, H.333, G.336, R.416 Ligands: AES.5, PEG.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.192, A:H.333 Water bridges: A:H.333 1PE.7: 9 residues within 4Å: Chain A: F.149, I.321, Q.325, V.327, P.345 Chain B: F.149, I.321, Q.325, V.327 1 PLIP interactions: 1 interactions with chain B Water bridges: B:S.318

1 x AES: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE(Non-covalent)

AES.5: 4 residues within 4Å: Chain A: G.336, D.409, R.413 Ligands: 1PE.4 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:R.413

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.11: 3 residues within 4Å: Chain A: E.189, Y.192 Ligands: 1PE.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.158 PEG.12: 7 residues within 4Å: Chain A: E.427, Q.431, K.451, Y.452, H.453, P.454, H.456 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.427, A:H.456 Water bridges: A:E.427 PEG.18: 6 residues within 4Å: Chain B: R.142, P.170, G.171, S.172, H.241 Ligands: GOL.14 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.142, B:R.142, B:P.170, B:H.241 Water bridges: B:E.173, B:E.173, B:S.174 PEG.19: 4 residues within 4Å: Chain B: Q.106, M.115, E.237 Ligands: GOL.15 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.13: 6 residues within 4Å: Chain A: A.113, A.114, M.115, N.116, Y.236, K.291 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.115, A:N.116, A:Y.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sundararaman, L. et al., Structure of subunit A mutants H156A, N157A and N157T of the A1AO ATP synthase. To be Published

Release Date

2012-09-05

Peptides

V-type ATP synthase beta chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

V-type ATP synthase beta chain