SMTL ID : 3ssq.1

CcmK2 - form 1 dodecamer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-12-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: S.59 Chain B: G.58, S.59 Chain C: G.58, S.59 Chain D: S.59 Chain E: G.58, S.59 Chain F: G.58, S.59 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain F Hydrogen bonds: B:S.59, E:S.59, D:S.59, C:S.59, F:S.59 GOL.6: 10 residues within 4Å: Chain G: S.59 Chain H: G.58, S.59 Chain I: G.58, S.59 Chain J: S.59 Chain K: G.58, S.59 Chain L: G.58, S.59 5 PLIP interactions: 1 interactions with chain I, 1 interactions with chain L, 1 interactions with chain K, 1 interactions with chain H, 1 interactions with chain J Hydrogen bonds: I:S.59, L:S.59, K:S.59, H:S.59, J:S.59

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: R.31 Chain B: R.31, S.59, R.61 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain D: R.31 Chain E: R.31, S.59, R.61 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain E: R.31 Chain F: R.31, S.59, R.61 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain F: R.31, E.91, L.93 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain G: R.31 Chain H: R.31, S.59, R.61 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain J: R.31 Chain K: R.31, S.59, R.61 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain K: R.31 Chain L: R.31, S.59, R.61 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain L: R.31, E.91, L.93 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samborska, B. et al., A CcmK2 double layer is the dominant architectural feature of the beta-carboxysomal shell facet. Structure (2012)

Release Date

2012-07-11

Peptides

Carbon dioxide concentrating mechanism protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

Carbon dioxide concentrating mechanism protein