SMTL ID : 3st7.1

Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.288, H.290, E.295, H.337 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.288, A:H.290, A:E.295, A:E.295, A:H.337 ZN.4: 4 residues within 4Å: Chain B: H.288, H.290, E.295, H.337 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.288, B:H.290, B:E.295, B:E.295, B:H.337

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: F.215, K.216, S.218, R.219, Y.236, Y.239, Y.250 Chain B: K.296, D.330 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.219, A:R.219, A:Y.236, B:K.296 GOL.3: 3 residues within 4Å: Chain A: I.317, E.318 Chain B: T.246 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.246, A:E.318 GOL.5: 9 residues within 4Å: Chain A: K.296, D.330 Chain B: F.215, K.216, S.218, R.219, Y.236, Y.239, Y.250 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.219, B:R.219, A:K.296 Water bridges: B:Y.250 GOL.6: 3 residues within 4Å: Chain A: T.246 Chain B: I.317, E.318 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.246, B:E.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyafusa, T. et al., Crystal structure of the enzyme CapF of Staphylococcus aureus reveals a unique architecture composed of two functional domains. Biochem.J. (2012)

Release Date

2012-02-15

Peptides

Capsular polysaccharide synthesis enzyme Cap5F: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Capsular polysaccharide synthesis enzyme Cap5F

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