SMTL ID : 3st9.1

Crystal structure of ClpP in heptameric form from Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

homo-heptamer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.125, P.127, D.174 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.125 SO4.4: 2 residues within 4Å: Chain D: E.180, K.183 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.180 Salt bridges: D:K.183

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: K.60, D.61 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain C: K.151, R.154 Chain D: P.118, N.119 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:R.154, C:R.154, D:P.118, D:N.119 Water bridges: D:N.119, D:A.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Structural switching of Staphylococcus aureus Clp protease: a key to understanding protease dynamics. J.Biol.Chem. (2011)

Release Date

2011-09-07

Peptides

ATP-dependent Clp protease proteolytic subunit: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

ATP-dependent Clp protease proteolytic subunit

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