SMTL ID : 3stc.1

Crystal structure of loop 7 truncated mutant of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-tetramer

Ligands

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: A.113, F.114, P.137, Q.138 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain B: A.113, P.137, Q.138, R.165 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: K.52, Q.110, K.135, F.223 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain C: A.113, P.137, Q.138, R.165 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain C: K.52, Q.110, K.135, H.199, F.223, E.225 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain D: A.113, F.114, P.137, Q.138, R.165 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain D: K.52, Q.110, K.135, H.199, F.223, E.225 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain C: A.103, C.106, D.107, N.130 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.103, C:N.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Allison, T.M. et al., An Extended (beta)7(alpha)7 Substrate-Binding Loop Is Essential for Efficient Catalysis by 3-Deoxy-D-manno-Octulosonate 8-Phosphate Synthase. Biochemistry (2011)

Release Date

2011-11-23

Peptides

2-dehydro-3-deoxyphosphooctonate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

2-dehydro-3-deoxyphosphooctonate aldolase