SMTL ID : 3su9.1

E. Cloacae MURA in complex with UDP-N-acetylmuramic acid and covalent adduct of PEP with Cys115

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: R.91, A.92, I.94, W.95, R.120, H.125, G.164 Ligands: EPZ.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.95, A:R.120 Water bridges: A:R.120, A:G.164, A:G.164 EDO.2: 2 residues within 4Å: Chain A: R.252, W.279 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.252, A:W.279 EDO.3: 1 residues within 4Å: Chain A: L.138 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.138 EDO.4: 3 residues within 4Å: Chain A: R.288, K.290, E.318 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.288, A:K.290, A:K.290 Water bridges: A:R.288 EDO.5: 4 residues within 4Å: Chain A: A.102, R.103, G.149, R.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.149 EDO.6: 5 residues within 4Å: Chain A: S.81, E.140, Y.142, K.144 Ligands: ACT.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.81, A:S.81, A:E.140, A:K.144

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 4 residues within 4Å: Chain A: Q.108, E.139, K.144 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.108 Salt bridges: A:K.144

1 x EPZ: (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid(Non-covalent)

EPZ.8: 24 residues within 4Å: Chain A: K.22, N.23, L.26, A.92, W.95, A.119, R.120, P.121, V.122, D.123, L.124, H.125, K.160, V.161, S.162, V.163, G.164, T.304, D.305, I.327, F.328, R.331, L.370 Ligands: EDO.1 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:L.26, A:A.92, A:W.95 Hydrogen bonds: A:N.23, A:D.123, A:L.124, A:H.125, A:V.163, A:G.164, A:D.305, A:R.331 Water bridges: A:K.22, A:A.119, A:R.120, A:R.120, A:R.120, A:R.120, A:R.120, A:K.160, A:E.188, A:E.188, A:R.232, A:R.232, A:T.304, A:I.327, A:R.371, A:R.397, A:R.397 Salt bridges: A:K.22, A:R.120, A:R.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA). J.Biol.Chem. (2012)

Release Date

2012-03-07

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Related Entries With Identical Sequence