- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CA: CALCIUM ION(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.2: 1 residues within 4Å:- Ligands: ATP.3
No protein-ligand interaction detected (PLIP)MG.4: 4 residues within 4Å:- Chain A: D.198, H.203, E.228, D.230
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.203, A:E.228, A:D.230, H2O.3, H2O.3
MG.6: 1 residues within 4Å:- Ligands: ATP.7
No protein-ligand interaction detected (PLIP)MG.8: 4 residues within 4Å:- Chain B: D.198, H.203, E.228, D.230
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.203, B:E.228, B:D.230, H2O.5, H2O.5
MG.10: 1 residues within 4Å:- Ligands: ATP.11
No protein-ligand interaction detected (PLIP)MG.12: 4 residues within 4Å:- Chain C: D.198, H.203, E.228, D.230
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:H.203, C:E.228, C:D.230, H2O.8, H2O.8
MG.14: 1 residues within 4Å:- Ligands: ATP.15
No protein-ligand interaction detected (PLIP)MG.16: 4 residues within 4Å:- Chain D: D.198, H.203, E.228, D.230
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:H.203, D:E.228, D:D.230, H2O.11, H2O.11
MG.18: 1 residues within 4Å:- Ligands: ATP.19
No protein-ligand interaction detected (PLIP)MG.20: 4 residues within 4Å:- Chain E: D.198, H.203, E.228, D.230
5 PLIP interactions:3 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:H.203, E:E.228, E:D.230, H2O.14, H2O.14
MG.22: 1 residues within 4Å:- Ligands: ATP.23
No protein-ligand interaction detected (PLIP)MG.24: 4 residues within 4Å:- Chain F: D.198, H.203, E.228, D.230
5 PLIP interactions:3 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:H.203, F:E.228, F:D.230, H2O.17, H2O.17
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.3: 13 residues within 4Å:- Chain A: W.664, Q.665, D.697, F.698, D.699, K.702, N.703, Y.704, I.705, R.707, R.710, W.713
- Ligands: MG.2
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:Q.665, A:D.697, A:D.699, A:N.703, A:I.705, A:I.705, A:W.713
- Salt bridges: A:R.707, A:R.710, A:R.710
- pi-Stacking: A:W.664, A:W.664, A:W.664
- pi-Cation interactions: A:K.702
ATP.7: 13 residues within 4Å:- Chain B: W.664, Q.665, D.697, F.698, D.699, K.702, N.703, Y.704, I.705, R.707, R.710, W.713
- Ligands: MG.6
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:Q.665, B:D.697, B:D.699, B:N.703, B:I.705, B:I.705, B:W.713
- Salt bridges: B:R.707, B:R.710, B:R.710
- pi-Stacking: B:W.664, B:W.664, B:W.664
- pi-Cation interactions: B:K.702
ATP.11: 13 residues within 4Å:- Chain C: W.664, Q.665, D.697, F.698, D.699, K.702, N.703, Y.704, I.705, R.707, R.710, W.713
- Ligands: MG.10
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:Q.665, C:D.697, C:D.699, C:N.703, C:I.705, C:I.705, C:W.713
- Salt bridges: C:R.707, C:R.710, C:R.710
- pi-Stacking: C:W.664, C:W.664, C:W.664
- pi-Cation interactions: C:K.702
ATP.15: 13 residues within 4Å:- Chain D: W.664, Q.665, D.697, F.698, D.699, K.702, N.703, Y.704, I.705, R.707, R.710, W.713
- Ligands: MG.14
14 PLIP interactions:14 interactions with chain D- Hydrogen bonds: D:Q.665, D:D.697, D:D.699, D:N.703, D:I.705, D:I.705, D:W.713
- Salt bridges: D:R.707, D:R.710, D:R.710
- pi-Stacking: D:W.664, D:W.664, D:W.664
- pi-Cation interactions: D:K.702
ATP.19: 13 residues within 4Å:- Chain E: W.664, Q.665, D.697, F.698, D.699, K.702, N.703, Y.704, I.705, R.707, R.710, W.713
- Ligands: MG.18
14 PLIP interactions:14 interactions with chain E- Hydrogen bonds: E:Q.665, E:D.697, E:D.699, E:N.703, E:I.705, E:I.705, E:W.713
- Salt bridges: E:R.707, E:R.710, E:R.710
- pi-Stacking: E:W.664, E:W.664, E:W.664
- pi-Cation interactions: E:K.702
ATP.23: 13 residues within 4Å:- Chain F: W.664, Q.665, D.697, F.698, D.699, K.702, N.703, Y.704, I.705, R.707, R.710, W.713
- Ligands: MG.22
14 PLIP interactions:14 interactions with chain F- Hydrogen bonds: F:Q.665, F:D.697, F:D.699, F:N.703, F:I.705, F:I.705, F:W.713
- Salt bridges: F:R.707, F:R.710, F:R.710
- pi-Stacking: F:W.664, F:W.664, F:W.664
- pi-Cation interactions: F:K.702
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiang, Y. et al., Crystallographic Insights Into the Autocatalytic Assembly Mechanism of a Bacteriophage Tail Spike. Mol.Cell (2009)
- Release Date
- 2011-08-03
- Peptides
- Preneck appendage protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CA: CALCIUM ION(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiang, Y. et al., Crystallographic Insights Into the Autocatalytic Assembly Mechanism of a Bacteriophage Tail Spike. Mol.Cell (2009)
- Release Date
- 2011-08-03
- Peptides
- Preneck appendage protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A